Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.6e-127 458.8 239 100.0
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 7.2e-125 450.7 239 98.3
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.5e-119 433.0 270 86.7
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 9.1e-112 407.1 239 87.4
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.6e-108 395.2 245 86.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 6.1e-100 367.9 234 85.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.0e-83 313.9 239 69.9
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 5.7e-82 308.1 240 70.8
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.5e-79 298.9 243 67.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.1e-77 293.9 242 68.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 4.3e-77 292.0 246 66.3
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.2e-76 290.4 240 65.4
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 2.1e-76 289.7 240 67.5
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.1e-76 288.1 240 68.3
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.8e-75 286.6 239 67.4
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.0e-75 285.8 240 67.9
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.6e-74 282.7 244 64.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 3.4e-74 282.3 239 65.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 5.8e-74 281.6 240 67.9
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.7e-73 280.0 241 66.8
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.2e-73 279.6 192 74.5
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.9e-73 279.3 239 66.5
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 3.5e-71 272.3 250 62.8
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.5e-71 272.3 241 64.7
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 7.8e-71 271.2 253 60.5
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.3e-70 270.4 238 66.0
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.7e-70 270.0 240 63.8
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 3.9e-70 268.9 239 65.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 3.9e-70 268.9 239 65.7
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.9e-70 268.9 239 62.3
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.1e-69 267.3 188 76.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.5e-69 266.9 189 75.1
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.3e-69 265.4 248 60.5
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 5.6e-69 265.0 239 65.3
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 5.6e-69 265.0 239 65.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 9.5e-69 264.2 248 58.9
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.6e-68 263.5 243 61.3
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.6e-68 263.5 240 61.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.6e-68 263.5 253 61.3
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 2.1e-68 263.1 241 63.9
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 4.7e-68 261.9 249 60.6
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 6.2e-68 261.5 242 62.8
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 6.2e-68 261.5 239 63.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.1e-67 260.8 240 60.8
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.4e-67 260.4 239 63.6
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.8e-67 260.0 244 59.8
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.1e-67 259.2 239 60.7
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 3.1e-67 259.2 189 73.5
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.0e-67 258.8 239 59.8
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 4.0e-67 258.8 223 65.9
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.2e-66 257.3 241 62.7
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.0e-66 256.5 239 62.8
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 4.4e-66 255.4 235 62.6
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 5.8e-66 255.0 239 59.0
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 5.8e-66 255.0 239 59.0
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 9.8e-66 254.2 239 62.3
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 9.8e-66 254.2 243 59.7
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 9.8e-66 254.2 239 61.5
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-65 253.8 239 59.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.7e-65 253.4 239 59.0
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.7e-65 253.4 238 58.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.2e-65 253.1 239 60.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.7e-65 252.3 239 59.0
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.7e-65 252.3 242 59.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 3.7e-65 252.3 231 61.0
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.9e-65 251.9 206 66.5
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 6.4e-65 251.5 189 70.4
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 6.4e-65 251.5 243 60.5
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 8.3e-65 251.1 239 58.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.1e-64 250.8 243 62.6
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.4e-64 250.4 235 61.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.4e-64 250.4 244 58.2
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 2.4e-64 249.6 235 61.7
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.2e-64 249.2 235 61.3
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.2e-64 249.2 225 63.1
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.2e-64 249.2 179 73.2
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 4.1e-64 248.8 235 60.0
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 5.4e-64 248.4 187 72.2
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 5.4e-64 248.4 204 67.6
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.2e-63 247.3 240 57.5
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.6e-63 246.9 262 56.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.0e-63 246.5 183 72.1
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.7e-63 246.1 312 50.6
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 3.5e-63 245.7 207 66.2
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 6.0e-63 245.0 271 56.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.7e-62 243.4 236 60.6
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.3e-62 243.0 244 57.4
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 6.6e-62 241.5 168 75.6
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.9e-61 240.0 247 58.3
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 5.6e-61 238.4 225 60.9
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 5.6e-61 238.4 239 56.1
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 7.3e-61 238.0 197 67.0
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 2.8e-60 236.1 192 65.1
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.4e-59 233.8 242 56.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 8.9e-59 231.1 204 60.8
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-58 230.7 191 68.1
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.2e-58 230.7 191 68.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.0e-58 229.9 247 55.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.4e-56 223.8 210 61.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 4.6e-55 218.8 153 75.2
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.7e-54 216.9 182 65.9
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.0e-54 216.1 168 69.0
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.2e-52 210.7 194 57.7
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.1e-52 209.9 242 53.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 2.1e-52 209.9 137 77.4
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.1e-51 206.1 258 51.9
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.5e-50 203.8 146 74.7
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.2e-44 181.8 240 47.9
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.9e-43 178.3 129 77.5
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 5.8e-42 175.3 193 50.8
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.3e-41 174.1 132 67.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 2.4e-40 169.9 148 60.8
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.2e-40 169.5 239 48.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.8e-35 153.7 217 45.6
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-34 150.6 104 71.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 7.6e-34 148.3 332 37.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.7e-33 147.1 151 54.3
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.7e-33 147.1 104 69.2
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.9e-33 145.6 104 69.2
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.7e-31 139.8 97 70.1
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.9e-29 133.7 167 47.3
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.3e-28 131.0 229 39.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.6e-28 130.6 222 39.2
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.6e-28 130.6 229 39.3
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 6.2e-28 128.6 136 52.2
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.4e-27 127.5 123 54.5
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.0e-27 125.9 212 38.7
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.4e-24 117.5 110 53.6
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.9e-24 117.1 73 74.0
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 9.3e-24 114.8 97 57.7
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 3.0e-22 109.8 97 63.9
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.3e-21 106.3 153 46.4
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.7e-20 102.8 160 41.2
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.1e-19 101.3 82 63.4
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.1e-16 91.3 134 39.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.6e-15 85.9 133 40.6
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 3.9e-14 82.8 122 43.4
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.2e-10 71.2 168 33.3
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.0e-09 68.2 51 70.6
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.3e-09 67.8 100 44.0
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.5e-08 63.5 107 43.0
Ca_28818_v3 Cicer arietinum L. HOM05D005346 ORTHO05D007051 6.1e-07 58.9 131 31.3
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.8e-06 57.4 54 61.1


User provided reference genes

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