Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 6.5e-235 817.0 406 100.0
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 7.4e-231 803.5 406 98.3
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 3.4e-212 741.5 407 92.1
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 1.3e-206 723.0 408 89.5
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 2.8e-206 721.8 402 89.3
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.9e-203 711.8 407 88.0
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 5.0e-187 657.9 422 80.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 4.3e-162 575.1 391 74.2
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 9.5e-162 573.9 384 72.9
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.2e-159 567.0 372 75.0
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.3e-158 563.5 398 71.9
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.0e-155 553.9 401 69.1
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 8.6e-155 550.8 365 75.6
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.1e-154 550.4 404 69.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 7.3e-154 547.7 388 70.6
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.2e-153 547.0 398 68.6
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 2.1e-153 546.2 346 77.7
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.1e-153 546.2 355 76.1
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 3.6e-153 545.4 393 70.5
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 8.1e-153 544.3 339 79.4
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.4e-152 543.5 398 69.6
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.8e-152 543.1 396 69.2
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.4e-152 542.7 398 69.1
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 3.1e-152 542.3 397 70.3
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 4.0e-152 542.0 397 68.5
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 8.9e-152 540.8 398 69.1
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.5e-151 540.0 344 77.6
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.7e-150 536.6 340 78.2
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.7e-150 536.6 340 78.2
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 2.9e-150 535.8 338 79.0
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 3.8e-150 535.4 397 70.0
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 3.8e-150 535.4 400 68.5
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.1e-149 533.9 401 68.8
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.1e-149 533.9 392 69.1
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.4e-149 533.5 398 66.6
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.4e-149 533.5 345 76.8
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.9e-149 533.1 398 68.6
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.9e-149 533.1 352 76.1
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.9e-149 533.1 423 65.0
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 3.2e-149 532.3 395 68.6
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 4.1e-149 531.9 356 75.6
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 7.1e-149 531.2 365 72.3
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 9.2e-149 530.8 343 75.5
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.1e-148 529.6 346 74.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.3e-147 526.9 303 81.8
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.3e-147 526.2 391 68.0
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.9e-147 525.4 401 67.8
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 5.1e-147 525.0 368 71.2
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 6.6e-147 524.6 343 75.5
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 1.5e-146 523.5 342 76.3
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.3e-146 522.3 350 74.3
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.6e-146 521.5 423 62.9
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.6e-146 521.5 345 75.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 4.7e-145 518.5 337 76.9
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.8e-144 516.5 317 77.9
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.0e-144 514.2 403 66.5
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 2.6e-143 512.7 389 69.2
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 2.6e-143 512.7 348 72.4
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 2.6e-143 512.7 342 75.4
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 9.9e-143 510.8 317 77.9
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.3e-142 510.4 293 81.2
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 2.9e-142 509.2 356 72.5
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 2.9e-142 509.2 359 70.8
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 3.8e-142 508.8 315 78.1
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 6.4e-142 508.1 337 73.9
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-141 507.3 402 65.9
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.9e-141 506.5 340 74.7
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.4e-141 506.1 373 69.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 4.2e-141 505.4 402 66.4
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 7.1e-141 504.6 402 65.7
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.2e-140 503.8 400 66.8
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.6e-140 503.4 290 80.0
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.1e-140 503.1 402 66.2
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.1e-140 503.1 404 65.6
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 2.7e-140 502.7 336 74.7
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.7e-140 502.7 402 65.4
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 4.6e-140 501.9 295 79.7
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 4.6e-140 501.9 295 79.3
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.8e-140 501.1 402 65.7
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.0e-139 500.7 394 65.5
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 1.0e-139 500.7 328 74.7
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.3e-139 500.4 315 75.2
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.3e-139 499.6 303 76.6
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 8.7e-139 497.7 317 76.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.9e-138 496.5 348 71.0
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 4.3e-138 495.4 330 74.5
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 2.1e-137 493.0 331 71.3
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.1e-137 493.0 354 71.8
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.4e-136 490.3 285 79.3
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.4e-136 490.3 320 73.8
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 1.4e-136 490.3 303 75.9
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.5e-135 486.9 398 63.1
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.9e-134 482.6 355 67.6
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.9e-133 479.9 378 64.8
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 3.2e-133 479.2 354 65.3
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.6e-132 476.9 397 62.5
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 3.5e-132 475.7 378 63.0
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.0e-131 474.2 405 63.0
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.3e-131 473.8 397 62.5
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 2.3e-131 473.0 398 62.3
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 2.3e-131 473.0 398 62.3
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.9e-131 472.2 265 81.1
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 5.1e-131 471.9 397 62.2
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.9e-130 469.9 488 54.7
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 5.6e-130 468.4 298 72.1
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 4.5e-127 458.8 266 82.0
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 5.8e-127 458.4 295 73.9
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 2.4e-125 453.0 345 67.0
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.6e-124 450.3 281 75.8
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.7e-124 449.5 309 69.9
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 6.0e-124 448.4 389 61.2
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.2e-121 438.0 387 59.9
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.5e-119 433.7 330 62.7
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.5e-114 417.2 281 68.0
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 4.5e-111 405.6 431 53.4
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.1e-109 401.0 296 62.8
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.0e-107 392.9 274 65.3
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 2.8e-105 386.3 316 58.9
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 2.4e-104 383.3 340 61.8
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 3.1e-104 382.9 217 82.5
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 1.7e-102 377.1 401 54.4
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.4e-99 367.5 399 52.9
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.2e-92 344.4 396 50.8
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.6e-90 336.7 181 85.1
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.1e-72 276.2 143 84.6
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 4.5e-71 272.7 145 85.5
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 1.8e-67 260.8 256 57.0
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 4.7e-44 183.0 164 62.8
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 4.0e-43 179.9 173 54.9
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 7.1e-40 169.1 186 49.5
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.8e-36 157.1 96 67.7
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 4.7e-36 156.4 120 65.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.1e-35 153.7 130 63.8
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.9e-33 147.1 161 50.9
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 6.4e-33 146.0 134 61.2
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.1e-30 136.3 84 77.4
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 1.3e-28 131.7 64 92.2
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.5e-26 124.8 63 85.7
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.6e-23 114.8 66 78.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.9e-21 107.8 72 75.0
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 4.9e-17 93.2 66 69.7
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.1e-16 89.4 71 60.6
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.1e-15 87.8 66 63.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 4.6e-07 60.1 46 58.7


User provided reference genes

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