Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g027530 Solanum pennellii HOM05D005270 ORTHO05D006239 1.6e-225 785.8 398 100.0
Solyc08g079070.2 Solanum lycopersicum HOM05D005270 ORTHO05D006239 6.6e-224 780.4 398 99.2
PGSC0003DMG400004791 Solanum tuberosum HOM05D005270 ORTHO05D006239 4.7e-222 774.2 398 98.7
CAN.G1217.18 Capsicum annuum HOM05D000486 ORTHO05D000375 9.5e-215 750.0 396 95.5
Peaxi162Scf00002g00815 Petunia axillaris HOM05D005270 ORTHO05D006239 2.6e-204 715.3 397 90.2
Nitab4.5_0009175g0010 Nicotiana tabacum HOM05D005270 ORTHO05D006239 4.2e-194 681.4 407 87.2
Nitab4.5_0000993g0070 Nicotiana tabacum HOM05D005270 ORTHO05D006239 5.1e-192 674.5 398 86.7
Cc08_g12920 Coffea canephora HOM05D005270 ORTHO05D006239 1.3e-187 659.8 390 83.3
Hma1.2p1_1414F.1_g281890 Hydrangea macrophylla HOM05D005270 ORTHO05D006239 7.1e-186 654.1 398 80.9
Dinv21601 Davidia involucrata HOM05D005270 ORTHO05D006239 9.3e-186 653.7 398 81.4
Lj2A211T58 Lonicera japonica HOM05D005270 ORTHO05D006239 3.0e-184 648.7 399 80.2
CSS0023019 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-182 642.9 398 80.2
CSS0046114 Camellia sinensis var. sinensis HOM05D005270 ORTHO05D006239 1.6e-182 642.9 398 80.2
Actinidia27450 Actinidia chinensis HOM05D005270 ORTHO05D006239 8.1e-182 640.6 398 80.2
Oeu038010.1 Olea europaea HOM05D005270 ORTHO05D006239 5.3e-181 637.9 398 78.9
Actinidia05188 Actinidia chinensis HOM05D005270 ORTHO05D006239 6.9e-181 637.5 398 79.9
MSTRG.25537 Avicennia marina HOM05D005270 ORTHO05D006239 6.9e-181 637.5 398 79.1
SGA_v2.0_scaffold144G35994 Striga asiatica HOM05D005270 ORTHO05D003965 1.2e-177 626.7 396 78.0
Dinv39103 Davidia involucrata HOM05D000201 ORTHO05D001515 5.1e-176 621.3 387 80.1
Rhsim07G0104300 Rhododendron simsii HOM05D005270 ORTHO05D006239 5.1e-176 621.3 399 77.7
Migut.E01048 Erythranthe guttata HOM05D005270 ORTHO05D006239 9.6e-175 617.1 398 77.1
Duzib068G0557 Durio zibethinus HOM05D005270 ORTHO05D006239 2.4e-173 612.5 398 78.4
GSVIVG01004774001 Vitis vinifera HOM05D005270 ORTHO05D006239 9.9e-172 607.1 398 76.9
CiPaw.11G150400 Carya illinoinensis HOM05D005270 ORTHO05D006239 2.2e-171 605.9 399 76.2
GSVIVG01001274001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.2e-171 605.9 398 76.9
SalBow1G0839 Salvia bowleyana HOM05D005270 ORTHO05D006239 3.8e-171 605.1 376 80.3
Eucgr.D02030 Eucalyptus grandis HOM05D005270 ORTHO05D006239 4.9e-171 604.7 408 75.2
vmacro14106 Vaccinium macrocarpon HOM05D005270 ORTHO05D006239 3.2e-170 602.1 419 73.5
Thecc.03G257000 Theobroma cacao HOM05D005270 ORTHO05D006239 5.5e-170 601.3 401 76.3
CANSAT21G2027 Cannabis sativa HOM05D005270 ORTHO05D006239 9.3e-170 600.5 400 75.0
QL12p013868 Quercus lobata HOM05D005270 ORTHO05D006239 2.1e-169 599.4 399 76.7
Gohir.A03G010000 Gossypium hirsutum HOM05D005270 ORTHO05D006239 2.7e-169 599.0 398 75.9
ClCG01G003850 Citrullus lanatus HOM05D005270 ORTHO05D006239 4.6e-169 598.2 402 75.1
FvH4_5g00280 Fragaria vesca HOM05D005270 ORTHO05D006239 4.6e-169 598.2 398 76.6
Gohir.D03G160700 Gossypium hirsutum HOM05D005270 ORTHO05D006239 4.6e-169 598.2 398 75.9
Atru.chr9.1379_Atru.chr9.1380 Acer truncatum HOM05D005270 ORTHO05D006239 6.0e-169 597.8 400 76.5
FAN08G1405 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-168 596.7 398 76.4
Gorai.006G212700 Gossypium raimondii HOM05D005270 ORTHO05D006239 2.3e-168 595.9 398 75.6
FAN18G1040 Fragaria x ananassa HOM05D005270 ORTHO05D006239 3.0e-168 595.5 398 76.4
RcHm_v2.0_Chr7g0202331 Rosa chinensis HOM05D005270 ORTHO05D006239 5.1e-168 594.7 398 76.1
Ciclev10020501m.g Citrus clementina HOM05D005270 ORTHO05D006239 6.7e-168 594.3 398 75.6
MD06G1067000 Malus domestica HOM05D005270 ORTHO05D006239 6.7e-168 594.3 398 75.9
Sed0019529 Sechium edule HOM05D005270 ORTHO05D006239 6.7e-168 594.3 389 75.8
FAN04G3018 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.7e-168 594.0 403 75.7
Gohir.A09G195500 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.5e-167 593.2 398 75.4
Gohir.D09G190100 Gossypium hirsutum HOM05D005270 ORTHO05D006239 1.5e-167 593.2 398 75.4
Prupe.5G075500 Prunus persica HOM05D005270 ORTHO05D006239 1.5e-167 593.2 398 76.1
PGR031G3926 Punica granatum HOM05D005270 ORTHO05D006239 1.5e-167 593.2 402 74.9
Potri.001G120400 Populus trichocarpa HOM05D005270 ORTHO05D006239 1.9e-167 592.8 405 75.8
Sc01g0009340 Simmondsia chinensis HOM05D005270 ORTHO05D006239 2.5e-167 592.4 398 74.6
TWI81G0718 Tripterygium wilfordii HOM05D005270 ORTHO05D006239 3.3e-167 592.0 399 75.4
MELO3C005559.2 Cucumis melo HOM05D005270 ORTHO05D006239 7.4e-167 590.9 406 73.9
FAN13G2928 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.3e-166 590.1 398 75.6
Manes.01G076600 Manihot esculenta HOM05D005270 ORTHO05D006239 1.3e-166 590.1 399 74.7
CsaV3_5G003980 Cucumis sativus L. HOM05D005270 ORTHO05D006239 1.4e-165 586.6 406 73.4
unitig_0.g1234 Utricularia gibba HOM05D005270 ORTHO05D006239 1.4e-165 586.6 399 72.9
Sabra01G0092800 Salix brachista HOM05D005270 ORTHO05D006239 2.0e-164 582.8 405 75.1
Glyma.05G056400 Glycine max HOM05D005270 ORTHO05D006239 9.3e-162 573.9 403 71.7
MBI04_g37584_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 9.3e-162 573.9 390 73.8
HanXRQChr03g0087851 Helianthus annuus HOM05D005270 ORTHO05D006239 3.5e-161 572.0 398 72.1
Aqoxy7G00723 Aquilegia oxysepala HOM05D005270 ORTHO05D006239 3.3e-159 565.5 392 72.2
TAR629G2769 Trochodendron aralioides HOM05D005270 ORTHO05D006239 3.3e-159 565.5 340 80.9
arahy.Tifrunner.gnm1.ann1.9F7ELE Arachis hypogaea HOM05D005270 ORTHO05D006239 1.6e-158 563.1 402 70.6
Ca_25339_v3 Cicer arietinum L. HOM05D005270 ORTHO05D006239 1.6e-158 563.1 398 71.1
Lalb_Chr05g0225581 Lupinus albus HOM05D005270 ORTHO05D006239 1.6e-158 563.1 395 72.4
Lsat_1_v5_gn_6_90321 Lactuca sativa HOM05D005270 ORTHO05D006239 8.2e-158 560.8 400 71.8
arahy.Tifrunner.gnm1.ann1.VW53Z5 Arachis hypogaea HOM05D005270 ORTHO05D006239 1.1e-157 560.5 402 70.4
Lj4g0020394 Lotus japonicus HOM05D005270 ORTHO05D006239 1.8e-157 559.7 366 75.7
Glyma.17G138600 Glycine max HOM05D005270 ORTHO05D006239 2.4e-157 559.3 401 70.8
HPP92_022434 Vanilla planifolia HOM05D005270 ORTHO05D006239 6.9e-157 557.8 389 70.2
Carub.0001s1190 Capsella rubella HOM05D005270 ORTHO05D006239 9.0e-157 557.4 408 69.9
CARHR012530 Cardamine hirsuta HOM05D005270 ORTHO05D006239 1.3e-155 553.5 408 69.9
Psat4g070360 Pisum sativum HOM05D005270 ORTHO05D006239 1.3e-155 553.5 404 69.6
PSO170G6680 Papaver somniferum HOM05D005270 ORTHO05D006239 6.5e-155 551.2 404 70.5
Medtr4g101620 Medicago truncatula HOM05D005270 ORTHO05D006239 1.1e-154 550.4 407 69.3
A06p09330 Brassica napus HOM05D005270 ORTHO05D006239 1.9e-154 549.7 408 69.1
THA.LOC104809459 Tarenaya hassleriana HOM05D005270 ORTHO05D006239 3.2e-154 548.9 407 71.0
C05p11010 Brassica napus HOM05D005270 ORTHO05D006239 4.2e-154 548.5 408 68.9
DCAR_006814 Daucus carota HOM05D005270 ORTHO05D006239 5.5e-154 548.1 401 70.6
Cpa.g.sc29.127 Carica papaya HOM05D005270 ORTHO05D006239 7.2e-154 547.7 509 59.3
AL1G23510 Arabidopsis lyrata HOM05D005270 ORTHO05D006239 9.4e-154 547.4 407 68.8
Thhalv10007790m.g Eutrema salsugineum HOM05D005270 ORTHO05D006239 9.4e-154 547.4 408 69.1
PSO017G6911 Papaver somniferum HOM05D005270 ORTHO05D006239 1.6e-153 546.6 401 70.1
BolC5t29844H Brassica oleracea HOM05D005270 ORTHO05D006239 2.7e-153 545.8 408 68.6
Sp1g10840 Schrenkiella parvula HOM05D005270 ORTHO05D006239 3.6e-153 545.4 408 68.4
Aa31LG1G2400 Aethionema arabicum HOM05D005270 ORTHO05D006239 6.1e-153 544.7 407 68.6
ATR1152G004 Amborella trichopoda HOM05D005270 ORTHO05D006239 7.9e-153 544.3 359 73.5
TPR.G37612 Trifolium pratense HOM05D005270 ORTHO05D006239 1.0e-152 543.9 408 69.6
BraA06t24120Z Brassica rapa HOM05D005270 ORTHO05D006239 1.4e-152 543.5 411 67.9
AT1G12230 Arabidopsis thaliana HOM05D005270 ORTHO05D006239 2.5e-151 539.3 429 65.7
CDE12G0422 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 5.3e-149 531.6 398 67.6
ECA240G0014 Erigeron canadensis HOM05D000201 ORTHO05D006239 1.2e-148 530.4 403 67.7
Duzib205G1833 Durio zibethinus HOM05D005270 ORTHO05D006239 1.1e-146 523.9 402 68.4
AUR62007475 Chenopodium quinoa HOM05D005270 ORTHO05D006239 9.4e-146 520.8 369 72.4
EL10Ac5g13010 Beta vulgaris HOM05D005270 ORTHO05D006239 4.5e-140 501.9 405 65.7
Zm00001eb172680 Zea mays HOM05D005270 ORTHO05D006239 2.9e-139 499.2 399 64.2
VMungo0251G3554 Vigna mungo HOM05D005270 ORTHO05D006239 5.5e-138 495.0 306 78.1
Phvul.003G218000 Phaseolus vulgaris HOM05D005270 ORTHO05D006239 9.4e-138 494.2 404 63.4
AagrBONN_evm.TU.Sc2ySwM_369.586 Anthoceros agrestis HOM05D005270 ORTHO05D006239 1.8e-133 479.9 337 68.8
COL.COLO4_37215 Corchorus olitorius HOM05D005270 ORTHO05D006239 3.5e-132 475.7 283 80.2
SalBow1G5553 Salvia bowleyana HOM05D005270 ORTHO05D006239 1.7e-131 473.4 452 57.5
Pp3c15_6350 Physcomitrium patens HOM05D005270 ORTHO05D006239 3.8e-131 472.2 345 66.4
BcaC05g25195 Brassica carinata HOM05D005270 ORTHO05D006239 3.4e-127 459.1 372 63.7
CBR_g37411 Chara braunii HOM05D005270 ORTHO05D006239 1.3e-107 394.0 337 57.6
Sed0011689 Sechium edule HOM05D005270 ORTHO05D006239 4.7e-81 305.8 245 66.9
Psat5g235160 Pisum sativum HOM05D005270 ORTHO05D006239 1.2e-76 291.2 317 52.1
Psat5g232960 Pisum sativum HOM05D005270 ORTHO05D006239 5.6e-74 282.3 267 56.9
Gorai.N027100 Gossypium raimondii HOM05D005270 ORTHO05D006239 5.8e-71 272.3 160 78.8
Mapoly0029s0033 Marchantia polymorpha HOM05D005270 ORTHO05D006239 9.9e-71 271.6 199 64.8
CDE04G1696 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 6.0e-68 262.3 223 62.8
Mapoly0029s0029 Marchantia polymorpha HOM05D005270 ORTHO05D006239 1.1e-64 251.5 203 59.6
Os08g0154300 Oryza sativa ssp. japonica HOM05D005270 ORTHO05D006239 1.4e-64 251.1 226 60.6
DCAR_004923 Daucus carota HOM05D005270 ORTHO05D006239 6.2e-57 225.7 234 54.3
Haze_07851 Corylus avellana HOM05D005270 ORTHO05D006239 1.1e-56 224.9 260 50.0
Atru.chr9.1382 Acer truncatum HOM05D005270 ORTHO05D006239 3.9e-51 206.5 173 67.6
CDE04G2727 Ceratophyllum demersum HOM05D005270 ORTHO05D006239 4.1e-48 196.4 205 51.7
Atru.chr9.1383 Acer truncatum HOM05D005270 ORTHO05D006239 4.2e-45 186.4 110 80.0
AUR62039933 Chenopodium quinoa HOM05D005270 ORTHO05D006239 3.9e-43 179.9 110 78.2
SEGI_03700 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 4.1e-40 169.9 110 71.8
SEGI_36758 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 5.3e-40 169.5 128 65.6
SEGI_05849 Sequoiadendron giganteum HOM05D005270 ORTHO05D006239 6.9e-40 169.1 100 79.0
Cre14.g630847 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 1.1e-37 161.8 350 33.7
Gorai.003G169200 Gossypium raimondii HOM05D005270 ORTHO05D006239 1.8e-35 154.5 145 60.7
Cre01.g032650 Chlamydomonas reinhardtii HOM05D005270 ORTHO05D006239 2.3e-35 154.1 350 30.6
PRCOL_00004111 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.3e-33 148.3 243 35.4
MCO13G140 Micromonas commoda HOM05D005270 ORTHO05D006239 1.5e-31 141.4 266 33.5
FAN11G3467 Fragaria x ananassa HOM05D005270 ORTHO05D006239 1.7e-30 137.9 166 48.2
FAN28G1011 Fragaria x ananassa HOM05D005270 ORTHO05D006239 2.2e-30 137.5 166 48.2
PRCOL_00004269 Prasinoderma coloniale HOM05D005270 ORTHO05D006239 1.9e-21 107.8 255 30.6
RcHm_v2.0_Chr6g0270571 Rosa chinensis HOM05D005270 ORTHO05D006239 2.3e-19 100.9 78 64.1
BcaC07g38600 Brassica carinata HOM05D000238 ORTHO05D037998 1.1e-18 98.6 83 63.9
CAN.G1488.1 Capsicum annuum HOM05D005270 ORTHO05D006239 1.1e-18 98.6 131 45.0
CAN.G605.8 Capsicum annuum HOM05D005270 ORTHO05D006239 2.6e-18 97.4 51 88.2
Ca_29061_v3 Cicer arietinum L. HOM05D001546 ORTHO05D002908 2.6e-18 97.4 207 29.5
CSS0018551 Camellia sinensis var. sinensis HOM05D000691 ORTHO05D000378 5.7e-18 96.3 62 72.6
RcHm_v2.0_Chr6g0254981 Rosa chinensis HOM05D005270 ORTHO05D006239 2.8e-17 94.0 58 77.6
MBI03_g13472_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 1.8e-16 91.3 99 51.5
FAN04G2435 Fragaria x ananassa HOM05D005270 ORTHO05D006239 5.3e-16 89.7 60 70.0
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 2.7e-15 87.4 67 65.7
GSVIVG01028518001 Vitis vinifera HOM05D005270 ORTHO05D006239 2.7e-15 87.4 49 79.6
BcaC07g41719 Brassica carinata HOM05D005270 ORTHO05D039702 1.3e-14 85.1 80 58.8
BolC8t52299H Brassica oleracea HOM05D005270 ORTHO05D039702 1.3e-14 85.1 80 58.8
PRCOL_00005862 Prasinoderma coloniale HOM05D005270 ORTHO05D333221 1.3e-14 85.1 194 30.9
MBI14_g06401_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D006239 5.0e-14 83.2 53 73.6
SalBow1G3426 Salvia bowleyana HOM05D005270 ORTHO05D006239 8.5e-14 82.4 51 68.6
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.9e-13 81.3 53 71.7
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.5e-13 80.9 50 76.0
FAN14G3934 Fragaria x ananassa HOM05D000617 ORTHO05D000478 5.5e-13 79.7 52 71.2
FAN23G0587 Fragaria x ananassa HOM05D016072 ORTHO05D006239 5.5e-13 79.7 52 71.2
FAN26G2512 Fragaria x ananassa HOM05D005270 ORTHO05D006239 8.0e-12 75.9 52 69.2
FAN10G1808 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.6e-10 70.9 48 68.8
FAN23G1777 Fragaria x ananassa HOM05D016072 ORTHO05D006239 2.6e-10 70.9 48 68.8
MBI18_g46779_MAGBIO Magnolia biondii HOM05D005270 ORTHO05D004199 4.8e-09 66.6 52 61.5
MBI16_g06311_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 2.7e-07 60.8 40 70.0
C08p47590 Brassica napus HOM05D000101 ORTHO05D000089 3.8e-06 57.0 75 45.3


User provided reference genes

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