Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g027510 Solanum pennellii HOM05D006860 ORTHO05D009547 1.7e-148 529.3 263 100.0
Solyc08g079050.2 Solanum lycopersicum HOM05D006860 ORTHO05D009547 1.2e-146 523.1 263 98.9
PGSC0003DMG400004793 Solanum tuberosum HOM05D006860 ORTHO05D009547 1.4e-145 519.6 263 98.5
CAN.G1217.16 Capsicum annuum HOM05D006860 ORTHO05D009547 7.6e-120 434.1 259 83.4
Nitab4.5_0012289g0010 Nicotiana tabacum HOM05D006860 ORTHO05D009547 4.4e-99 365.2 228 81.6
Nitab4.5_0000993g0040 Nicotiana tabacum HOM05D006860 ORTHO05D009547 2.1e-93 346.3 207 84.5
Peaxi162Scf00002g00093 Petunia axillaris HOM05D006860 ORTHO05D009547 1.3e-90 337.0 229 74.7
Dinv39106 Davidia involucrata HOM05D006860 ORTHO05D009547 6.5e-87 324.7 265 60.8
RcHm_v2.0_Chr7g0202371 Rosa chinensis HOM05D006860 ORTHO05D009547 2.2e-82 309.7 273 59.0
FAN04G1232 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.8e-81 306.6 267 58.8
Oeu026500.1 Olea europaea HOM05D006860 ORTHO05D009547 2.4e-81 306.2 259 58.3
FvH4_5g00261 Fragaria vesca HOM05D006860 ORTHO05D009547 2.7e-80 302.8 268 58.2
FAN08G1076 Fragaria x ananassa HOM05D006860 ORTHO05D009547 2.7e-80 302.8 268 58.2
QL12p013422 Quercus lobata HOM05D006860 ORTHO05D009547 2.7e-80 302.8 277 56.3
FAN13G2943 Fragaria x ananassa HOM05D006860 ORTHO05D009547 1.3e-79 300.4 270 57.8
Haze_07857 Corylus avellana HOM05D006860 ORTHO05D009547 5.0e-79 298.5 268 54.5
Rhsim07G0104800 Rhododendron simsii HOM05D006860 ORTHO05D009547 8.0e-77 291.2 265 57.7
Cc08_g12900 Coffea canephora HOM05D006860 ORTHO05D009547 1.8e-76 290.0 266 57.5
Nn6g34033 Nelumbo nucifera HOM05D006860 ORTHO05D009547 1.2e-75 287.3 263 53.6
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 1.8e-73 280.0 277 55.6
Migut.A00808 Erythranthe guttata HOM05D006860 ORTHO05D009547 3.5e-72 275.8 269 54.6
Prupe.5G075300 Prunus persica HOM05D006860 ORTHO05D009547 2.9e-71 272.7 278 53.6
Aqoxy7G00725 Aquilegia oxysepala HOM05D006860 ORTHO05D009547 3.8e-71 272.3 270 50.0
DCAR_004924 Daucus carota HOM05D006860 ORTHO05D009547 3.8e-71 272.3 252 53.6
CANSAT21G2349 Cannabis sativa HOM05D006860 ORTHO05D009547 1.9e-70 270.0 285 53.3
vmacro14104 Vaccinium macrocarpon HOM05D006860 ORTHO05D009547 9.5e-70 267.7 227 60.4
MD06G1063700 Malus domestica HOM05D006860 ORTHO05D009547 2.1e-69 266.5 290 51.7
Potri.001G120700 Populus trichocarpa HOM05D006860 ORTHO05D009547 2.1e-69 266.5 255 55.3
TAR375G0404 Trochodendron aralioides HOM05D006860 ORTHO05D009547 6.8e-68 261.5 224 59.4
Duzib084G1019 Durio zibethinus HOM05D006860 ORTHO05D009547 4.4e-67 258.8 270 50.7
Thecc.03G256700 Theobroma cacao HOM05D006860 ORTHO05D009547 4.4e-67 258.8 268 49.6
FAN18G3824 Fragaria x ananassa HOM05D006860 ORTHO05D009547 5.7e-67 258.5 271 52.4
Sabra01G0093000 Salix brachista HOM05D006860 ORTHO05D009547 5.7e-67 258.5 257 53.7
TWI15G0511 Tripterygium wilfordii HOM05D006860 ORTHO05D009547 1.3e-66 257.3 266 52.6
Manes.01G076800 Manihot esculenta HOM05D006860 ORTHO05D009547 2.8e-66 256.1 269 49.4
Lalb_Chr23g0276231 Lupinus albus HOM05D006860 ORTHO05D009547 8.3e-66 254.6 300 44.7
EL10Ac5g13012 Beta vulgaris HOM05D006860 ORTHO05D009547 2.0e-64 250.0 256 50.8
CiPaw.11G150700 Carya illinoinensis HOM05D006860 ORTHO05D009547 5.9e-64 248.4 219 55.3
Gohir.A03G009800 Gossypium hirsutum HOM05D006860 ORTHO05D009547 5.0e-63 245.4 250 51.2
Gohir.D03G160900 Gossypium hirsutum HOM05D006860 ORTHO05D009547 5.0e-63 245.4 250 51.2
Gorai.003G169400 Gossypium raimondii HOM05D006860 ORTHO05D009547 1.1e-62 244.2 250 51.2
Glyma.15G182700 Glycine max HOM05D006860 ORTHO05D009547 7.3e-62 241.5 282 47.2
Psat1g138880 Pisum sativum HOM05D006860 ORTHO05D009547 2.1e-61 240.0 248 47.6
PSO017G2204 Papaver somniferum HOM05D006860 ORTHO05D009547 6.1e-61 238.4 258 44.6
Nn4g23121 Nelumbo nucifera HOM05D006860 ORTHO05D009547 3.0e-60 236.1 206 54.4
arahy.Tifrunner.gnm1.ann1.26U38F Arachis hypogaea HOM05D006860 ORTHO05D009547 5.2e-60 235.3 279 46.6
arahy.Tifrunner.gnm1.ann1.NHN2FI Arachis hypogaea HOM05D006860 ORTHO05D009547 5.2e-60 235.3 279 46.6
PSO170G3955 Papaver somniferum HOM05D006860 ORTHO05D009547 7.5e-59 231.5 259 44.0
Ca_02280_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.7e-58 230.3 268 44.8
Atru.chr9.1377 Acer truncatum HOM05D006860 ORTHO05D009547 3.7e-58 229.2 253 46.6
ECA233G1099 Erigeron canadensis HOM05D006860 ORTHO05D009547 6.4e-58 228.4 278 47.8
Eucgr.D02032 Eucalyptus grandis HOM05D006860 ORTHO05D009547 1.1e-57 227.6 268 45.5
Medtr2g044090 Medicago truncatula HOM05D006860 ORTHO05D009547 2.7e-56 223.0 246 45.1
THA.LOC104813362 Tarenaya hassleriana HOM05D006860 ORTHO05D009547 3.5e-56 222.6 273 44.7
Phvul.009G223700 Phaseolus vulgaris HOM05D006860 ORTHO05D009547 4.6e-56 222.2 260 47.3
AL7G30980 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 1.0e-55 221.1 267 46.1
AT4G22600 Arabidopsis thaliana HOM05D006860 ORTHO05D009547 1.0e-55 221.1 268 46.6
PGR031G3062 Punica granatum HOM05D006860 ORTHO05D009547 1.0e-55 221.1 255 49.0
Aa31LG6G4580 Aethionema arabicum HOM05D006860 ORTHO05D009547 1.3e-55 220.7 276 44.2
Lj6g0006421 Lotus japonicus HOM05D006860 ORTHO05D009547 3.0e-55 219.5 285 41.8
CARHR229490 Cardamine hirsuta HOM05D006860 ORTHO05D009547 3.9e-55 219.2 267 46.4
VMungo1309G2714 Vigna mungo HOM05D006860 ORTHO05D009547 6.6e-55 218.4 263 46.0
Carub.0007s1871 Capsella rubella HOM05D006860 ORTHO05D009547 8.6e-55 218.0 267 46.1
Cpa.g.sc29.129 Carica papaya HOM05D006860 ORTHO05D009547 1.5e-54 217.2 256 49.6
Thhalv10026873m.g Eutrema salsugineum HOM05D006860 ORTHO05D009547 4.3e-54 215.7 263 46.4
Sp7g20650 Schrenkiella parvula HOM05D006860 ORTHO05D009547 7.3e-54 214.9 267 46.1
Actinidia27452 Actinidia chinensis HOM05D006860 ORTHO05D009547 9.5e-54 214.5 200 53.5
C01p16890 Brassica napus HOM05D006860 ORTHO05D009547 9.5e-54 214.5 269 45.0
BraA01t01334Z Brassica rapa HOM05D006860 ORTHO05D009547 1.6e-53 213.8 269 45.0
A01p13880 Brassica napus HOM05D006860 ORTHO05D009547 2.8e-53 213.0 269 44.6
BolC1t01631H Brassica oleracea HOM05D006860 ORTHO05D009547 8.0e-53 211.5 269 44.6
BcaC09g51131 Brassica carinata HOM05D006860 ORTHO05D009547 1.1e-52 211.1 269 44.6
unitig_27.g24920 Utricularia gibba HOM05D006860 ORTHO05D009547 1.4e-52 210.7 236 50.8
HanXRQChr13g0394991 Helianthus annuus HOM05D006860 ORTHO05D009547 3.1e-52 209.5 268 47.4
Ah.12g056480 Amaranthus hybridus HOM05D006860 ORTHO05D009547 8.9e-52 208.0 231 49.8
Ciclev10024312m.g Citrus clementina HOM05D006860 ORTHO05D009547 2.9e-50 203.0 254 43.7
TPR.G24674 Trifolium pratense HOM05D006860 ORTHO05D009547 7.0e-49 198.4 243 42.8
HPP92_025603 Vanilla planifolia HOM05D006860 ORTHO05D009547 9.9e-43 177.9 268 39.2
HPP92_025643 Vanilla planifolia HOM05D006860 ORTHO05D009547 7.1e-41 171.8 257 42.0
Sc07g0009390 Simmondsia chinensis HOM05D000685 ORTHO05D000511 2.8e-37 159.8 239 42.7
Zm00001eb249700 Zea mays HOM05D006860 ORTHO05D009547 3.2e-33 146.4 253 36.4
Os02g0661300 Oryza sativa ssp. japonica HOM05D006860 ORTHO05D009547 3.1e-28 129.8 255 33.3
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 4.0e-28 129.4 131 53.4
COL.COLO4_37211 Corchorus olitorius HOM05D006860 ORTHO05D009547 1.2e-27 127.9 116 54.3
Sp7g20630 Schrenkiella parvula HOM05D006860 ORTHO05D015488 6.6e-23 112.1 240 32.5
Ciclev10023898m.g Citrus clementina HOM05D006860 ORTHO05D009547 7.3e-22 108.6 122 45.1
BcaB03g15468 Brassica carinata HOM05D000561 ORTHO05D009547 3.6e-21 106.3 230 33.0
Carub.0008s2329 Capsella rubella HOM05D006860 ORTHO05D009547 1.4e-20 104.4 241 28.2
BraA03t14423Z Brassica rapa HOM05D006860 ORTHO05D028065 3.1e-20 103.2 255 31.0
A03p53570 Brassica napus HOM05D006860 ORTHO05D028065 9.0e-20 101.7 255 30.6
BcaNung01688 Brassica carinata HOM05D006860 ORTHO05D015488 1.2e-19 101.3 247 28.3
C07p51900 Brassica napus HOM05D006860 ORTHO05D015488 1.5e-19 100.9 246 27.6
BolC7t45689H Brassica oleracea HOM05D006860 ORTHO05D015488 1.5e-19 100.9 246 27.6
BcaNung02492 Brassica carinata HOM05D006860 ORTHO05D015488 2.0e-19 100.5 246 27.2
BraA03t14425Z Brassica rapa HOM05D006860 ORTHO05D015488 2.0e-19 100.5 255 31.0
BraA03t14422Z Brassica rapa HOM05D006860 ORTHO05D015488 4.5e-19 99.4 246 26.8
BcaNung01686 Brassica carinata HOM05D006860 ORTHO05D009547 5.8e-19 99.0 255 30.2
A03p53590 Brassica napus HOM05D006860 ORTHO05D015488 5.8e-19 99.0 256 31.6
C07p51910 Brassica napus HOM05D006860 ORTHO05D028065 5.8e-19 99.0 255 30.6
A03p53560 Brassica napus HOM05D006860 ORTHO05D015488 1.3e-18 97.8 246 26.8
AUR62007478 Chenopodium quinoa HOM05D006860 ORTHO05D009547 1.7e-18 97.4 106 52.8
BcaB03g15470 Brassica carinata HOM05D006860 ORTHO05D009547 2.9e-18 96.7 237 30.0
BcaNung02490 Brassica carinata HOM05D006860 ORTHO05D015488 2.9e-18 96.7 252 29.0
BcaNung01685 Brassica carinata HOM05D006860 ORTHO05D009547 2.4e-17 93.6 254 27.6
BolC7t45690H Brassica oleracea HOM05D006860 ORTHO05D028065 7.1e-17 92.0 255 28.6
C07p51920 Brassica napus HOM05D006860 ORTHO05D015488 1.2e-16 91.3 241 29.0
BolC7t45692H Brassica oleracea HOM05D006860 ORTHO05D015488 1.2e-16 91.3 241 29.0
Ciclev10010734m.g Citrus clementina HOM05D006860 ORTHO05D009547 1.3e-15 87.8 111 44.1
EL10Ac8g19726 Beta vulgaris HOM05D006860 ORTHO05D009547 2.3e-15 87.0 80 50.0
TPR.G18947 Trifolium pratense HOM05D006860 ORTHO05D009547 3.1e-12 76.6 72 50.0
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 5.3e-12 75.9 60 66.7
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 3.4e-11 73.2 58 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 2.2e-10 70.5 248 28.2
Ciclev10018172m.g Citrus clementina HOM05D006860 ORTHO05D009547 6.4e-10 68.9 61 50.8
SMO271G0144 Selaginella moellendorffii HOM05D000828 ORTHO05D000623 6.4e-10 68.9 231 24.2
Ca_19832_v3 Cicer arietinum L. HOM05D000030 ORTHO05D000009 1.1e-09 68.2 68 52.9
Ca_27374_v3 Cicer arietinum L. HOM05D006860 ORTHO05D009547 1.9e-09 67.4 68 51.5
SGA_v2.0_scaffold15G07181 Striga asiatica HOM05D011902 ORTHO05D009547 3.2e-09 66.6 57 54.4
Peaxi162Scf00111g00149 Petunia axillaris HOM05D000828 ORTHO05D000623 9.3e-09 65.1 232 25.0
SalBow8G2820 Salvia bowleyana HOM05D000828 ORTHO05D000623 1.6e-08 64.3 235 24.7
Migut.M00721 Erythranthe guttata HOM05D000828 ORTHO05D000623 4.6e-08 62.8 233 23.6
Migut.I00366 Erythranthe guttata HOM05D000828 ORTHO05D000623 1.0e-07 61.6 229 21.8
FvH4_6g11270 Fragaria vesca HOM05D000828 ORTHO05D000623 1.0e-07 61.6 232 24.6
FAN02G1375 Fragaria x ananassa HOM05D003017 ORTHO05D003388 1.0e-07 61.6 229 25.8
FAN14G0600 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.0e-07 61.6 232 24.6
CiPaw.10G060200 Carya illinoinensis HOM05D000828 ORTHO05D000623 1.3e-07 61.2 179 26.8
FAN05G4803 Fragaria x ananassa HOM05D003017 ORTHO05D003388 1.8e-07 60.8 232 25.0
PGR102G2234 Punica granatum HOM05D000828 ORTHO05D000623 3.9e-07 59.7 259 23.2
FvH4_1g25360 Fragaria vesca HOM05D000828 ORTHO05D000623 6.7e-07 58.9 240 25.4
FAN14G2316 Fragaria x ananassa HOM05D003017 ORTHO05D003388 6.7e-07 58.9 229 24.5
FAN23G1352 Fragaria x ananassa HOM05D000828 ORTHO05D000623 6.7e-07 58.9 243 25.1
MSTRG.14964 Avicennia marina HOM05D000828 ORTHO05D000623 1.1e-06 58.2 231 22.9
Nitab4.5_0009343g0020 Nicotiana tabacum HOM05D000828 ORTHO05D000623 1.5e-06 57.8 234 23.1
FAN26G0989 Fragaria x ananassa HOM05D000828 ORTHO05D000623 1.9e-06 57.4 101 28.7
CDE10G0387 Ceratophyllum demersum HOM05D000828 ORTHO05D000623 3.3e-06 56.6 209 24.4
Nitab4.5_0000035g0210 Nicotiana tabacum HOM05D000828 ORTHO05D000623 3.3e-06 56.6 232 22.4
PGSC0003DMG400011102 Solanum tuberosum HOM05D000828 ORTHO05D000623 3.3e-06 56.6 187 25.1
FAN19G1830 Fragaria x ananassa HOM05D000828 ORTHO05D000623 4.3e-06 56.2 101 28.7
Nitab4.5_0010209g0020 Nicotiana tabacum HOM05D000828 ORTHO05D000623 4.3e-06 56.2 242 24.4
RcHm_v2.0_Chr3g0462811 Rosa chinensis HOM05D000828 ORTHO05D000623 4.3e-06 56.2 233 22.3
AL7G31000 Arabidopsis lyrata HOM05D006860 ORTHO05D009547 9.6e-06 55.1 110 35.5


User provided reference genes

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