Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 7.7e-70 266.9 126 100.0
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 7.7e-70 266.9 126 100.0
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 3.0e-66 255.0 126 94.4
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 9.8e-65 250.0 125 92.8
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.3e-64 247.3 126 93.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.4e-63 246.1 126 90.5
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.8e-63 245.7 126 92.9
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 90.5
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 90.5
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 88.9
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 90.5
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 91.3
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 88.9
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 88.1
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.5e-62 241.5 125 89.6
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 89.7
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.9e-62 240.7 125 89.6
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 87.3
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 87.3
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 88.1
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 86.5
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 87.3
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 87.3
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 87.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 88.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 85.7
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 87.3
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.1e-60 236.5 126 88.1
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.1e-60 236.5 125 86.4
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.5e-60 236.1 126 86.5
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.5e-60 236.1 126 87.3
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 86.5
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.9e-60 235.7 125 86.4
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 86.5
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 88.1
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.9e-60 235.7 126 85.7
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.9e-60 235.7 126 86.5
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 86.5
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 3.3e-60 235.0 126 86.5
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 88.2
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 88.1
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 4.2e-60 234.6 127 87.4
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 5.6e-60 234.2 126 87.3
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 87.3
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 86.5
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 85.7
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 85.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 86.5
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 86.5
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 88.1
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 86.5
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 86.5
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 85.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 85.7
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 84.9
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 86.5
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 3.6e-59 231.5 126 84.9
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 4.7e-59 231.1 126 84.9
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 87.3
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 86.5
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 6.1e-59 230.7 126 86.5
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 86.5
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 87.3
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 85.7
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 6.1e-59 230.7 127 87.4
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 86.5
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 8.0e-59 230.3 125 84.0
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.0e-58 229.9 124 84.7
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 87.3
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.4e-58 229.6 126 87.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.4e-58 229.6 124 86.3
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 1.4e-58 229.6 125 83.2
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.8e-58 229.2 126 87.3
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.8e-58 229.2 126 86.5
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.8e-58 229.2 126 87.3
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.8e-58 229.2 124 85.5
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 85.7
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 86.5
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 86.5
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.3e-58 228.8 125 82.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 2.3e-58 228.8 125 82.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 86.5
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 83.3
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 84.1
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 5.2e-58 227.6 126 86.5
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 84.9
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 2.0e-57 225.7 126 85.7
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 82.5
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.1
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.4e-57 224.9 127 84.3
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.1
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 4.4e-57 224.6 107 99.1
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 82.5
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 81.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 6.4e-56 220.7 127 85.0
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 6.4e-56 220.7 140 75.0
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 79.4
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 81.7
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 3.5e-54 214.9 126 81.7
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 4.6e-54 214.5 126 81.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 2.3e-53 212.2 114 85.1
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 3.9e-53 211.5 126 77.8
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 6.6e-53 210.7 139 77.0
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.6e-51 206.1 124 78.2
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.7e-51 204.5 112 85.7
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 2.0e-49 199.1 107 86.0
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.4e-49 198.4 107 86.0
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.4e-49 198.4 126 71.4
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 3.4e-49 198.4 126 73.8
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 4.4e-49 198.0 94 93.6
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 5.8e-49 197.6 107 86.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 9.8e-49 196.8 107 86.0
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 86.0
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 2.9e-48 195.3 126 73.0
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 4.9e-48 194.5 107 85.0
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.1e-47 193.4 107 84.1
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.1e-47 193.4 107 84.1
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.4e-47 193.0 93 91.4
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 9.2e-47 190.3 107 82.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.7e-46 188.7 112 82.1
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 2.7e-46 188.7 107 79.4
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.7e-46 188.7 126 69.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.3e-45 186.4 94 88.3
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.3e-45 186.4 107 85.0
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.0e-45 185.3 112 80.4
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 8.6e-45 183.7 104 81.7
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.9e-44 182.6 107 81.3
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 2.4e-39 165.6 122 64.8
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.4e-39 164.5 126 66.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.6e-38 162.9 141 60.3
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.0e-37 160.2 124 65.3
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 6.2e-35 151.0 102 64.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 8.1e-35 150.6 126 61.9
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 8.1e-35 150.6 75 88.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 4.9e-32 141.4 79 79.7
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 9.2e-31 137.1 104 60.6
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.0e-30 134.4 75 85.3
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 7.8e-30 134.0 79 79.7
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.3e-29 132.5 67 88.1
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.6e-29 131.0 66 87.9
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.5e-28 129.0 126 54.8
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-27 126.3 91 68.1
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-26 121.3 91 64.8
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 5.8e-25 117.9 93 66.7
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.3e-24 116.7 91 56.0
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.9e-24 114.8 93 63.4
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 6.0e-22 107.8 97 58.8
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 7.8e-22 107.5 75 66.7
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.0e-17 92.8 102 55.9
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 4.4e-17 91.7 102 53.9
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 2.2e-16 89.4 103 46.6
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 9.3e-15 84.0 78 51.3
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.2e-14 83.6 43 88.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 7.6e-09 64.3 45 68.9
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 9.9e-09 63.9 42 76.2


User provided reference genes

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