Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 5.3e-202 708.0 505 100.0
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.1e-172 610.5 505 90.9
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 6.9e-170 601.3 468 96.2
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.6e-121 440.7 542 66.6
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.6e-102 377.5 547 65.4
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.9e-98 364.0 551 63.9
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 9.3e-90 335.1 506 61.9
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 2.9e-43 180.6 520 35.2
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 2.0e-39 167.9 518 35.1
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 7.4e-39 166.0 526 33.8
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 3.1e-37 160.6 512 36.7
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 3.2e-34 150.6 541 34.0
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 3.2e-34 150.6 506 38.7
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 4.7e-33 146.7 498 35.7
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.4e-32 145.2 515 29.9
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 4.0e-32 143.7 516 32.0
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.3e-31 140.6 512 28.5
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 7.5e-31 139.4 521 28.6
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 9.7e-31 139.0 514 30.0
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 6.3e-30 136.3 494 32.0
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 7.0e-29 132.9 493 27.6
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 9.1e-29 132.5 488 29.3
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.6e-28 131.7 520 29.4
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 1.3e-27 128.6 195 44.1
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 1.7e-27 128.3 506 26.5
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 5.0e-27 126.7 496 26.6
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 6.5e-27 126.3 133 51.9
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 6.5e-27 126.3 511 26.6
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 1.5e-26 125.2 491 26.7
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.5e-26 124.4 551 29.4
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 2.5e-26 124.4 200 41.0
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.5e-26 124.4 137 53.3
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 3.2e-26 124.0 517 35.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 5.5e-26 123.2 132 52.3
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 7.2e-26 122.9 521 26.5
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 9.4e-26 122.5 490 25.3
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 9.4e-26 122.5 184 42.9
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-25 121.7 220 40.5
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.6e-25 121.7 220 40.5
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 1.6e-25 121.7 525 25.3
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 1.6e-25 121.7 493 28.4
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.1e-25 121.3 194 39.7
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.1e-25 121.3 200 40.5
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.1e-25 121.3 200 40.5
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.1e-25 121.3 134 51.5
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.1e-25 121.3 494 28.5
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 2.1e-25 121.3 138 50.7
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 2.1e-25 121.3 530 28.5
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 2.7e-25 120.9 492 32.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.7e-25 120.9 216 40.7
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 2.7e-25 120.9 124 53.2
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 3.6e-25 120.6 506 31.0
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 3.6e-25 120.6 494 26.7
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 3.6e-25 120.6 191 42.4
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 6.1e-25 119.8 499 27.1
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 8.0e-25 119.4 518 26.6
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.0e-24 119.0 175 44.0
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 1.4e-24 118.6 511 26.8
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.4e-24 118.6 509 30.5
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.8e-24 118.2 517 25.3
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.8e-24 118.2 183 43.7
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.0e-24 117.5 175 48.0
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 4.0e-24 117.1 131 51.9
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.0e-24 117.1 498 33.7
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 4.0e-24 117.1 125 51.2
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 5.2e-24 116.7 502 28.3
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 5.2e-24 116.7 165 44.8
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.2e-24 116.7 521 25.9
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 6.8e-24 116.3 201 39.8
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 6.8e-24 116.3 201 39.8
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 6.8e-24 116.3 111 55.9
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 6.8e-24 116.3 494 26.9
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 8.8e-24 115.9 210 40.0
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 8.8e-24 115.9 125 52.8
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 8.8e-24 115.9 523 26.6
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.5e-23 115.2 519 25.4
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 2.0e-23 114.8 219 39.7
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 2.0e-23 114.8 174 47.7
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 3.4e-23 114.0 125 50.4
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 3.4e-23 114.0 497 28.0
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.4e-23 113.6 521 31.7
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 4.4e-23 113.6 508 25.2
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 5.7e-23 113.2 99 60.6
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 7.5e-23 112.8 499 25.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 7.5e-23 112.8 502 33.7
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 7.5e-23 112.8 237 37.6
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 9.8e-23 112.5 147 46.3
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.7e-22 111.7 506 26.7
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.7e-22 111.7 503 31.8
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.7e-22 111.7 503 31.8
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.7e-22 111.7 145 46.9
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.2e-22 111.3 497 30.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.8e-22 110.9 210 39.5
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.8e-22 110.9 211 38.9
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 4.8e-22 110.2 206 41.7
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 8.3e-22 109.4 102 56.9
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 8.3e-22 109.4 201 39.8
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 1.1e-21 109.0 495 27.7
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.1e-21 109.0 499 26.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.4e-21 108.6 143 43.4
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.4e-21 108.6 499 33.7
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 3.1e-21 107.5 502 36.9
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 3.1e-21 107.5 154 42.9
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 4.1e-21 107.1 132 48.5
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 4.1e-21 107.1 498 27.9
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 9.1e-21 105.9 174 42.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-20 105.5 140 48.6
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-20 105.5 140 48.6
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.2e-20 105.5 202 40.1
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.2e-20 105.5 502 24.5
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.0e-20 104.8 127 45.7
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-20 104.8 205 37.1
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.5e-20 104.0 198 41.4
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 3.5e-20 104.0 210 37.1
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.5e-20 104.0 490 25.5
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.5e-20 104.0 490 25.5
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 7.7e-20 102.8 510 26.3
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 7.7e-20 102.8 504 24.4
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.3e-19 102.1 489 25.6
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.7e-19 101.7 148 44.6
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 2.3e-19 101.3 496 28.8
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 2.9e-19 100.9 216 38.0
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 3.8e-19 100.5 207 37.7
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.8e-19 100.5 150 44.0
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 1.5e-18 98.6 497 24.9
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.9e-18 98.2 105 50.5
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.5e-18 97.8 503 26.0
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.8e-17 94.4 133 41.4
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 8.0e-17 92.8 78 59.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 4.0e-16 90.5 501 34.1
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.4e-15 87.4 110 38.2
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 4.4e-15 87.0 105 41.9
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 5.7e-15 86.7 98 45.9
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.7e-14 85.1 115 39.1
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 7.0e-13 79.7 141 36.2
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 4.5e-12 77.0 141 39.0
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 4.5e-12 77.0 97 42.3
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 2.3e-11 74.7 102 41.2
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 3.8e-11 73.9 110 40.0
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 1.5e-10 72.0 112 37.5
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 1.9e-10 71.6 66 53.0
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.4e-08 65.5 53 58.5
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 8.9e-08 62.8 140 31.4
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 8.9e-08 62.8 196 31.6
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.5e-07 62.0 215 30.2
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 7.5e-07 59.7 101 36.6
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 9.8e-07 59.3 49 55.1
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 1.7e-06 58.5 54 46.3
unitig_52.g17410 Utricularia gibba HOM05D001680 ORTHO05D001596 1.7e-06 58.5 148 31.1


User provided reference genes

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