Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.9e-289 998.4 496 100.0
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 2.3e-282 974.9 496 97.4
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 2.3e-279 964.9 496 96.2
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 5.4e-252 874.0 497 86.1
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 4.5e-246 854.4 497 84.9
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 1.3e-240 836.3 497 82.9
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 4.3e-233 811.2 502 81.5
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 2.8e-179 632.5 478 65.9
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 3.0e-178 629.0 492 65.4
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 3.7e-176 622.1 498 62.9
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.7e-174 615.9 481 65.3
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 1.2e-171 607.1 503 63.0
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 1.6e-171 606.7 489 63.8
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 1.4e-170 603.6 487 62.4
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 5.2e-170 601.7 495 62.8
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.4e-169 599.0 490 63.1
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.4e-169 599.0 490 63.3
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 3.4e-169 599.0 492 61.8
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 5.8e-169 598.2 492 62.2
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 1.3e-168 597.0 455 66.2
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 2.9e-168 595.9 493 63.3
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 6.4e-168 594.7 497 64.0
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 6.4e-168 594.7 486 60.9
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 1.1e-167 594.0 458 65.9
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.4e-167 593.6 490 63.3
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 4.1e-167 592.0 443 66.6
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 5.4e-167 591.7 492 61.2
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 5.4e-167 591.7 495 60.2
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 2.0e-166 589.7 498 61.2
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 1.3e-165 587.0 497 60.6
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 2.3e-165 586.3 485 60.6
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 5.0e-165 585.1 489 60.5
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 6.6e-165 584.7 490 62.2
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.9e-164 583.2 494 61.5
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 4.3e-164 582.0 458 64.2
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 5.6e-164 581.6 492 60.0
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 9.5e-164 580.9 496 59.5
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 2.1e-163 579.7 487 61.6
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 8.1e-163 577.8 480 61.7
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 1.4e-162 577.0 489 62.2
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 1.4e-162 577.0 472 64.2
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 3.1e-162 575.9 494 59.3
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 8.9e-162 574.3 487 61.0
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.2e-161 573.9 551 56.3
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 1.5e-161 573.5 487 61.0
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 2.2e-160 569.7 479 59.3
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 1.4e-159 567.0 492 58.5
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 2.4e-159 566.2 492 58.1
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 3.2e-159 565.8 432 62.3
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 4.1e-159 565.5 494 58.5
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 7.1e-159 564.7 457 60.4
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 2.7e-158 562.8 497 57.9
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 2.7e-158 562.8 497 57.9
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 6.0e-158 561.6 492 59.1
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 6.0e-158 561.6 497 59.4
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 6.0e-158 561.6 497 59.6
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 1.7e-157 560.1 483 60.0
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 1.7e-157 560.1 436 61.5
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 3.0e-157 559.3 493 59.0
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 3.0e-157 559.3 497 57.5
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 3.9e-157 558.9 502 58.2
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 5.1e-157 558.5 492 58.7
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 5.1e-157 558.5 475 59.4
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 6.6e-157 558.1 497 57.5
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 6.6e-157 558.1 404 67.1
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 8.6e-157 557.8 484 57.9
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.5e-156 556.2 497 59.0
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 3.3e-156 555.8 484 58.5
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 3.3e-156 555.8 438 63.0
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 4.3e-156 555.4 485 57.1
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 4.3e-156 555.4 489 57.3
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 7.3e-156 554.7 497 57.1
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 7.3e-156 554.7 497 58.8
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 3.1e-154 549.3 423 61.9
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 8.9e-154 547.7 497 57.5
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 4.4e-153 545.4 482 56.4
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 9.9e-153 544.3 497 58.1
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 1.7e-152 543.5 490 55.3
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 8.4e-152 541.2 496 56.2
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 1.9e-151 540.0 449 61.0
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 5.4e-151 538.5 481 57.4
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.2e-150 537.3 497 57.5
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 2.7e-150 536.2 454 59.0
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.7e-150 536.2 482 56.0
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 1.0e-149 534.3 484 57.0
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 3.3e-148 529.3 462 59.1
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 7.3e-148 528.1 401 66.3
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 9.6e-148 527.7 462 58.9
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 6.2e-147 525.0 493 55.8
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 5.8e-145 518.5 494 53.6
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 6.4e-144 515.0 495 55.8
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 2.7e-142 509.6 502 53.2
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 1.1e-140 504.2 513 50.7
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 3.3e-140 502.7 494 53.8
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 4.8e-139 498.8 492 53.5
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 6.2e-139 498.4 400 60.8
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 9.0e-138 494.6 408 60.0
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 3.4e-137 492.7 400 59.5
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 7.6e-137 491.5 503 51.3
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 1.7e-136 490.3 378 65.6
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 4.2e-135 485.7 452 55.8
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 9.3e-135 484.6 453 55.8
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 1.6e-131 473.8 345 67.0
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 2.4e-127 459.9 348 66.1
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 7.4e-124 448.4 340 65.3
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.0e-122 442.6 347 64.3
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 9.0e-122 441.4 346 62.4
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 3.8e-112 409.5 283 70.0
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 9.7e-92 341.7 497 42.1
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 2.2e-88 330.5 249 66.3
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 3.0e-85 320.1 425 42.4
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 1.6e-78 297.7 401 43.6
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 8.6e-72 275.4 415 40.2
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 8.6e-72 275.4 250 58.8
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.2e-70 271.6 304 50.0
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 5.7e-68 262.7 246 59.3
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 5.7e-68 262.7 456 37.9
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 9.8e-68 261.9 202 64.4
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 8.9e-53 212.2 179 58.7
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.2e-52 211.8 328 41.5
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.9e-50 204.5 453 30.7
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 6.0e-49 199.5 166 59.0
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 3.3e-39 167.2 238 39.9
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.1e-38 162.5 194 48.5
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 2.2e-35 154.5 271 39.5
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 8.4e-35 152.5 168 49.4
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.5e-31 141.7 110 62.7
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.1e-30 137.9 112 60.7
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 2.8e-30 137.5 333 30.3
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.5e-28 131.7 114 57.0
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 7.3e-23 112.8 78 66.7
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 3.6e-22 110.5 75 70.7
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 9.3e-18 95.9 111 45.0
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 2.1e-14 84.7 82 53.7
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 7.6e-12 76.3 59 62.7


User provided reference genes

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