Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 1.9e-144 516.5 427 100.0
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 2.7e-138 496.1 427 89.0
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 3.2e-136 489.2 427 90.9
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 1.6e-114 417.2 430 73.7
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.4e-99 366.7 429 70.6
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.6e-87 326.2 429 70.4
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 2.4e-78 297.0 427 69.6
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 9.0e-78 295.0 410 71.2
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 6.0e-74 282.3 408 68.6
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 1.1e-54 218.4 429 50.6
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 7.7e-53 212.2 430 60.5
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 7.7e-53 212.2 428 50.9
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 5.0e-52 209.5 428 49.5
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 3.0e-49 200.3 430 48.8
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 2.6e-45 187.2 427 50.8
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 1.4e-43 181.4 428 56.8
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 2.5e-43 180.6 425 49.2
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 2.5e-43 180.6 431 56.4
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 4.2e-43 179.9 425 59.5
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.2e-42 178.3 424 43.6
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 3.6e-42 176.8 405 56.5
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 4.7e-42 176.4 428 52.3
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 7.9e-42 175.6 431 54.3
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 1.0e-41 175.3 424 43.9
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 1.0e-41 175.3 421 58.4
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 2.3e-41 174.1 424 43.9
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 3.0e-41 173.7 428 43.0
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 3.0e-41 173.7 423 49.4
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 1.5e-40 171.4 425 43.5
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 3.3e-40 170.2 431 41.5
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.8e-39 167.2 427 53.6
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.8e-39 167.2 427 53.4
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 2.8e-39 167.2 428 59.6
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 4.8e-39 166.4 428 51.6
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 1.8e-38 164.5 429 41.7
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 2.4e-38 164.1 424 43.2
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 4.1e-38 163.3 426 39.9
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 7.0e-38 162.5 429 41.3
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 2.0e-37 161.0 422 46.7
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 3.5e-37 160.2 425 44.0
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 1.0e-36 158.7 431 54.5
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 2.9e-36 157.1 425 54.6
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 3.8e-36 156.8 402 54.0
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 3.8e-36 156.8 428 44.4
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 3.8e-36 156.8 425 44.0
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 6.5e-36 156.0 425 48.0
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 8.5e-36 155.6 432 52.3
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 1.1e-35 155.2 431 40.1
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 1.9e-35 154.5 432 52.1
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 5.5e-35 152.9 118 61.9
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 7.2e-35 152.5 120 54.2
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 1.2e-34 151.8 118 60.2
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.6e-34 151.4 428 44.4
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 1.6e-34 151.4 431 41.8
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 3.6e-34 150.2 428 46.0
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 3.6e-34 150.2 397 32.2
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 6.1e-34 149.4 425 49.4
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 1.0e-33 148.7 426 51.4
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 1.8e-33 147.9 421 41.6
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 3.0e-33 147.1 426 48.4
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 3.0e-33 147.1 426 48.4
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 3.0e-33 147.1 426 48.4
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 6.7e-33 146.0 428 44.6
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 5.7e-32 142.9 428 52.1
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.7e-32 142.9 432 41.9
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 7.4e-32 142.5 430 48.1
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.2e-31 141.0 428 49.3
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 6.3e-31 139.4 423 55.8
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 8.2e-31 139.0 391 58.1
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 8.2e-31 139.0 423 53.4
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 1.1e-30 138.7 419 50.6
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 1.8e-30 137.9 393 46.6
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.1e-30 137.1 425 51.8
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 3.1e-30 137.1 416 36.8
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 4.1e-30 136.7 428 56.3
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 4.1e-30 136.7 428 53.7
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 5.3e-30 136.3 119 53.8
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 5.3e-30 136.3 114 60.5
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 7.0e-30 136.0 425 50.8
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.2e-29 135.2 430 53.3
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.6e-29 134.8 430 54.0
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 1.0e-28 132.1 421 50.6
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 1.0e-28 132.1 428 52.1
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 3.8e-28 130.2 426 40.1
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 1.5e-27 128.3 425 49.9
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 6.1e-26 122.9 383 29.2
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 6.1e-26 122.9 116 50.9
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 8.0e-26 122.5 427 44.0
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 1.8e-25 121.3 119 49.6
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 1.5e-24 118.2 119 47.1
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 5.7e-24 116.3 431 48.5
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 9.8e-24 115.5 119 44.5
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 5.0e-20 103.2 348 54.3
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 1.8e-17 94.7 98 44.9
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 3.4e-16 90.5 92 48.9
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 1.7e-15 88.2 124 37.9
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 1.7e-15 88.2 61 78.7
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 1.8e-14 84.7 375 56.0
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.4e-14 84.3 378 50.0
Nitab4.5_0001438g0060 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.1e-14 84.0 54 75.9
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 1.6e-13 81.6 343 57.1
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 2.7e-13 80.9 376 52.7
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 5.9e-13 79.7 114 33.3
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.9e-12 77.4 128 38.3
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 2.9e-12 77.4 144 32.6
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 8.6e-12 75.9 92 45.7
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.5e-11 75.1 92 43.5
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.8e-10 70.9 120 35.0
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 3.6e-10 70.5 118 34.7
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 3.6e-10 70.5 180 49.4
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 1.4e-09 68.6 93 41.9
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 6.8e-09 66.2 200 26.5
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 6.8e-09 66.2 196 27.0
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.2e-08 65.5 89 39.3
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 1.5e-08 65.1 216 51.4
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 1.7e-07 61.6 134 27.6
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 3.7e-07 60.5 94 37.2
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 8.3e-07 59.3 150 27.3
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 2.4e-06 57.8 94 36.2
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 2.4e-06 57.8 183 23.5


User provided reference genes

Program Settings