Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 1.9e-53 212.2 106 100.0
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.7e-52 208.4 106 97.2
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 8.0e-52 206.8 106 97.2
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.0e-46 189.9 103 90.3
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 4.2e-45 184.5 104 87.5
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 6.8e-43 177.2 98 86.7
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 1.7e-41 172.6 102 80.4
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 6.3e-41 170.6 102 79.4
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 8.3e-41 170.2 102 80.4
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 8.3e-41 170.2 102 80.4
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.1e-40 169.9 102 78.4
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 1.4e-40 169.5 102 79.4
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 3.1e-40 168.3 102 78.4
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 4.1e-40 167.9 102 79.4
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 5.4e-40 167.5 102 77.5
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 1.2e-39 166.4 102 78.4
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 1.2e-39 166.4 100 80.0
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 2.0e-39 165.6 102 77.5
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.7e-39 165.2 100 77.0
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 4.5e-39 164.5 99 80.8
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 5.9e-39 164.1 102 76.5
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 5.9e-39 164.1 99 78.8
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 7.8e-39 163.7 102 77.5
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 7.8e-39 163.7 99 77.8
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 7.8e-39 163.7 99 79.8
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 1.0e-38 163.3 101 77.2
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 1.0e-38 163.3 104 75.0
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.0e-38 163.3 102 76.5
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 1.0e-38 163.3 99 79.8
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 1.3e-38 162.9 103 73.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-38 162.5 99 77.8
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 1.7e-38 162.5 100 77.0
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 1.7e-38 162.5 103 74.8
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 1.7e-38 162.5 99 77.8
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 2.3e-38 162.2 102 75.5
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 2.3e-38 162.2 103 74.8
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.3e-38 162.2 102 75.5
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 2.3e-38 162.2 98 79.6
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 2.3e-38 162.2 102 75.5
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 2.9e-38 161.8 99 76.8
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 2.9e-38 161.8 101 77.2
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 2.9e-38 161.8 101 77.2
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.9e-38 161.8 102 75.5
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.8e-38 161.4 100 76.0
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 3.8e-38 161.4 99 75.8
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 3.8e-38 161.4 99 75.8
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 3.8e-38 161.4 102 74.5
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 3.8e-38 161.4 102 74.5
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 3.8e-38 161.4 102 72.5
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 5.0e-38 161.0 99 78.8
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 6.6e-38 160.6 98 77.6
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 8.6e-38 160.2 98 77.6
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 8.6e-38 160.2 99 74.7
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 8.6e-38 160.2 101 75.2
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.1e-37 159.8 100 75.0
Actinidia02180 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.5e-37 159.5 102 75.5
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 1.9e-37 159.1 102 75.5
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 1.9e-37 159.1 99 76.8
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 1.9e-37 159.1 99 77.8
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 1.9e-37 159.1 100 75.0
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 2.5e-37 158.7 99 74.7
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.5e-37 158.7 99 74.7
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.5e-37 158.7 99 74.7
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 2.5e-37 158.7 101 74.3
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 2.5e-37 158.7 99 75.8
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 3.3e-37 158.3 99 75.8
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 3.3e-37 158.3 99 75.8
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 3.3e-37 158.3 99 75.8
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 3.3e-37 158.3 102 74.5
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 3.3e-37 158.3 99 75.8
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 5.6e-37 157.5 100 74.0
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 5.6e-37 157.5 99 74.7
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 5.6e-37 157.5 99 75.8
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 7.3e-37 157.1 99 74.7
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 9.5e-37 156.8 101 74.3
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 9.5e-37 156.8 101 74.3
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.2e-36 156.4 102 73.5
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.6e-36 156.0 99 75.8
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.6e-36 156.0 102 71.6
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 2.1e-36 155.6 99 73.7
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.1e-36 155.6 99 72.7
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 2.8e-36 155.2 99 71.7
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 2.8e-36 155.2 99 73.7
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 3.6e-36 154.8 100 74.0
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 4.7e-36 154.5 99 72.7
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 4.7e-36 154.5 99 73.7
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 4.7e-36 154.5 102 72.5
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.0e-35 153.3 98 72.4
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.0e-35 153.3 92 80.4
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.0e-35 153.3 99 73.7
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 1.0e-35 153.3 99 73.7
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 3.0e-35 151.8 105 69.5
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 3.0e-35 151.8 98 71.4
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 5.2e-35 151.0 99 71.7
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 8.9e-35 150.2 104 67.3
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.5e-34 149.4 99 70.7
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 2.0e-34 149.1 99 71.7
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.6e-34 148.7 98 69.4
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 2.6e-34 148.7 99 68.7
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.6e-34 148.7 104 68.3
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 2.6e-34 148.7 102 67.6
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 3.4e-34 148.3 102 68.6
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 3.4e-34 148.3 99 69.7
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 3.4e-34 148.3 99 70.7
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 7.5e-34 147.1 99 70.7
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 2.2e-33 145.6 99 68.7
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 4.9e-33 144.4 98 69.4
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 6.4e-33 144.1 99 67.7
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 6.4e-33 144.1 99 67.7
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 6.4e-33 144.1 99 69.7
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 6.4e-33 144.1 114 62.3
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 8.3e-33 143.7 100 67.0
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 1.4e-32 142.9 99 67.7
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 1.4e-32 142.9 99 66.7
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.4e-32 142.9 99 67.7
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 2.4e-32 142.1 99 65.7
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 2.4e-32 142.1 99 65.7
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 4.1e-32 141.4 99 65.7
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 5.4e-32 141.0 99 65.7
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 9.2e-32 140.2 99 64.6
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.2e-31 139.8 99 66.7
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 1.6e-31 139.4 99 64.6
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 1.6e-31 139.4 99 64.6
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 2.0e-31 139.0 96 66.7
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 3.5e-31 138.3 99 65.7
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 1.0e-30 136.7 98 64.3
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 1.7e-30 136.0 99 60.6
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 3.9e-30 134.8 99 62.6
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 1.9e-29 132.5 128 56.2
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 2.5e-29 132.1 168 46.4
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 3.3e-29 131.7 96 64.6
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 1.4e-27 126.3 99 60.6
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 3.1e-27 125.2 101 61.4
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 3.1e-27 125.2 101 58.4
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 3.1e-27 125.2 101 59.4
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 1.2e-26 123.2 97 60.8
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 7.5e-26 120.6 72 76.4
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.7e-25 119.4 72 76.4
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.1e-24 116.7 102 60.8
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 7.3e-21 104.0 68 69.1
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.6e-20 102.8 101 54.5
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 5.2e-19 97.8 98 54.1
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 2.0e-18 95.9 101 46.5
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 2.6e-18 95.5 75 58.7
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 4.9e-17 91.3 109 43.1
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 2.1e-15 85.9 143 38.5
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 4.6e-15 84.7 111 45.9
BolC7t45339H Brassica oleracea HOM05D003706 ORTHO05D004487 1.1e-13 80.1 83 53.0
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 1.6e-12 76.3 105 40.0
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 2.1e-12 75.9 56 64.3
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.3e-11 72.4 99 44.4
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 3.1e-11 72.0 49 71.4
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 4.0e-11 71.6 96 42.7
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 6.4e-09 64.3 99 41.4
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 5.4e-08 61.2 40 75.0
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 2.7e-07 58.9 58 53.4
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 3.9e-06 55.1 45 60.0


User provided reference genes

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