Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 6.5e-71 270.8 152 100.0
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 2.5e-70 268.9 152 99.3
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 3.9e-68 261.5 152 96.7
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 1.6e-61 239.6 151 86.8
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 9.0e-57 223.8 150 84.0
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.4e-46 189.9 145 71.7
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 1.4e-46 189.9 145 71.7
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.5e-46 189.1 145 73.1
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.5e-46 189.1 145 73.1
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 3.2e-46 188.7 145 71.7
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 1.4e-44 183.3 147 69.4
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 3.0e-44 182.2 145 69.7
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 3.0e-44 182.2 144 70.1
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 3.9e-44 181.8 147 68.7
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 3.3e-43 178.7 147 68.7
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 7.4e-43 177.6 145 69.7
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 9.7e-43 177.2 151 62.9
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 9.7e-43 177.2 145 67.6
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 1.3e-42 176.8 141 67.4
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 1.7e-42 176.4 150 65.3
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 3.7e-42 175.3 142 66.9
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.1e-41 173.7 158 62.7
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 1.8e-41 172.9 134 67.9
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 2.4e-41 172.6 158 62.7
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 3.1e-41 172.2 147 65.3
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 5.3e-41 171.4 144 66.7
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 5.3e-41 171.4 144 63.9
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 7.0e-41 171.0 147 65.3
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 2.0e-40 169.5 151 63.6
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 3.5e-40 168.7 142 66.9
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 3.5e-40 168.7 140 64.3
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 1.0e-39 167.2 147 61.9
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 1.3e-39 166.8 130 68.5
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 2.9e-39 165.6 147 61.2
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 2.9e-39 165.6 141 64.5
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 3.8e-39 165.2 147 61.9
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 8.5e-39 164.1 134 67.2
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.1e-38 163.7 145 62.8
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 1.1e-38 163.7 145 62.8
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.5e-38 163.3 145 62.1
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 2.5e-38 162.5 151 61.6
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 3.2e-38 162.2 143 63.6
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 3.2e-38 162.2 140 62.1
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 4.2e-38 161.8 141 61.0
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 5.5e-38 161.4 150 62.7
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 7.2e-38 161.0 144 63.2
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 7.2e-38 161.0 123 70.7
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 9.4e-38 160.6 145 61.4
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 9.4e-38 160.6 145 64.1
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 9.4e-38 160.6 147 59.9
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 1.2e-37 160.2 109 77.1
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 1.2e-37 160.2 145 60.0
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 1.2e-37 160.2 145 60.7
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 2.1e-37 159.5 113 72.6
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 2.7e-37 159.1 134 62.7
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 2.7e-37 159.1 120 70.8
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 3.6e-37 158.7 126 67.5
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 4.7e-37 158.3 138 61.6
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 4.7e-37 158.3 151 58.3
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 4.7e-37 158.3 142 62.7
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 8.0e-37 157.5 142 63.4
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 8.0e-37 157.5 144 60.4
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 1.0e-36 157.1 148 58.1
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 1.0e-36 157.1 144 61.8
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 1.8e-36 156.4 130 63.8
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 3.0e-36 155.6 130 65.4
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 4.0e-36 155.2 139 61.9
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 4.0e-36 155.2 148 58.8
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 6.7e-36 154.5 125 65.6
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 1.2e-35 153.7 147 57.1
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 3.3e-35 152.1 145 56.6
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 3.3e-35 152.1 120 65.8
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 5.7e-35 151.4 147 54.4
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 5.7e-35 151.4 149 56.4
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 7.5e-35 151.0 132 62.1
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 7.5e-35 151.0 123 67.5
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.7e-34 149.8 149 55.7
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.7e-34 149.8 149 55.7
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 2.8e-34 149.1 125 64.8
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 1.1e-33 147.1 137 56.2
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 1.1e-33 147.1 137 56.2
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 2.4e-33 146.0 125 64.0
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 4.1e-33 145.2 157 52.2
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 5.3e-33 144.8 126 58.7
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 5.3e-33 144.8 141 58.9
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 7.0e-33 144.4 147 54.4
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 7.0e-33 144.4 120 64.2
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 7.0e-33 144.4 151 53.6
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 1.2e-32 143.7 126 57.9
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 1.2e-32 143.7 126 57.9
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 1.2e-32 143.7 147 57.8
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.2e-32 143.7 147 53.1
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 1.6e-32 143.3 126 57.1
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.6e-32 143.3 132 57.6
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 1.0e-31 140.6 152 50.7
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 1.0e-31 140.6 152 50.7
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 1.7e-31 139.8 152 50.7
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 2.9e-31 139.0 143 53.8
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 6.5e-31 137.9 171 48.5
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 8.5e-31 137.5 134 58.2
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 1.1e-30 137.1 212 43.9
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 7.2e-30 134.4 151 51.7
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 1.2e-29 133.7 180 46.1
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 4.7e-29 131.7 126 55.6
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 1.8e-28 129.8 150 47.3
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 3.0e-28 129.0 136 55.9
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 5.2e-28 128.3 144 52.1
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 2.0e-27 126.3 126 53.2
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 2.6e-27 125.9 121 55.4
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 5.7e-27 124.8 126 52.4
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 9.8e-27 124.0 127 54.3
Hma1.2p1_1008F.1_g247180 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 3.7e-26 122.1 113 60.2
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 5.4e-25 118.2 147 51.7
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 1.7e-23 113.2 105 55.2
Nitab4.5_0000500g0150 Nicotiana tabacum HOM05D006148 ORTHO05D007955 2.9e-23 112.5 142 55.6
MBI06_g25325_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 1.2e-21 107.1 109 56.9
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 1.8e-20 103.2 308 30.8
Lj2A721G5 Lonicera japonica HOM05D006148 ORTHO05D007955 4.9e-18 95.1 70 71.4
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 1.1e-17 94.0 88 61.4
Cpa.g.sc1152.2 Carica papaya HOM05D006148 ORTHO05D007955 1.9e-14 83.2 76 59.2
SEGI_12345 Sequoiadendron giganteum HOM05D006148 ORTHO05D007955 9.5e-14 80.9 133 40.6
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 8.0e-13 77.8 125 42.4
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 2.3e-12 76.3 134 40.3
Oeu017208.1 Olea europaea HOM05D002196 ORTHO05D002565 9.2e-09 64.3 69 52.2


User provided reference genes

Program Settings