Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 7.6e-180 633.6 306 100.0
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.9e-176 621.3 306 98.0
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 9.0e-173 610.1 306 95.8
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.1e-162 576.6 308 90.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.3e-147 526.6 310 83.9
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.8e-147 525.0 312 84.0
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.0e-144 516.9 306 79.7
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.3e-144 515.8 305 80.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.4e-141 506.5 292 80.8
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 4.1e-141 505.0 308 78.2
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 4.1e-141 505.0 292 80.5
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.6e-140 503.1 296 79.4
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.5e-140 501.9 292 79.8
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.5e-140 501.5 287 79.1
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 4.5e-140 501.5 292 81.8
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 5.9e-140 501.1 296 79.4
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 5.9e-140 501.1 306 77.5
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.3e-139 500.0 306 77.5
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 2.9e-139 498.8 292 80.1
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 5.0e-139 498.0 285 80.0
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.5e-138 496.5 304 74.3
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.9e-138 496.1 292 78.1
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 3.2e-138 495.4 296 78.7
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 4.2e-138 495.0 306 75.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.2e-137 493.4 288 77.8
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.2e-137 493.4 294 78.2
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 1.6e-137 493.0 306 75.2
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.7e-137 492.3 297 76.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 2.7e-137 492.3 280 82.1
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 3.6e-137 491.9 292 78.4
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 1.4e-136 490.0 297 76.4
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.4e-136 490.0 294 78.6
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.4e-136 490.0 305 75.4
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.8e-136 489.6 292 79.1
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.8e-136 489.6 306 75.5
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 3.0e-136 488.8 306 75.2
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 5.2e-136 488.0 288 77.8
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 8.8e-136 487.3 295 76.3
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.2e-135 486.9 284 78.5
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 1.5e-135 486.5 297 75.8
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 2.6e-135 485.7 288 77.4
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 2.6e-135 485.7 285 78.6
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 3.4e-135 485.3 297 76.1
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 7.5e-135 484.2 306 74.5
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 7.5e-135 484.2 307 74.9
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 9.8e-135 483.8 291 76.3
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 9.8e-135 483.8 285 77.5
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.2e-134 482.6 286 81.8
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.2e-134 482.6 300 76.0
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.8e-134 482.3 297 75.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.3e-134 480.7 298 76.5
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.4e-133 479.9 297 74.7
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.4e-133 479.9 297 74.7
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-133 479.6 297 75.4
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.8e-133 479.6 286 76.9
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 2.4e-133 479.2 306 73.5
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 5.4e-133 478.0 297 75.4
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 9.1e-133 477.2 305 72.5
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.6e-132 476.5 298 74.5
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.6e-132 476.5 308 73.7
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 4.5e-132 474.9 286 76.9
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 4.5e-132 474.9 295 74.9
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 5.9e-132 474.6 296 75.0
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 7.7e-132 474.2 300 74.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 7.7e-132 474.2 295 73.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.0e-131 473.8 291 77.0
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.3e-131 473.4 286 77.6
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.3e-131 473.4 321 71.3
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.7e-131 473.0 260 83.1
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.3e-131 472.6 299 74.6
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 2.3e-131 472.6 296 74.0
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 3.8e-131 471.9 298 74.5
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 1.9e-130 469.5 296 74.7
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 2.5e-130 469.2 274 79.2
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 7.2e-130 467.6 296 70.6
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 1.8e-128 463.0 296 73.0
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.5e-127 459.9 309 71.8
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 4.4e-127 458.4 313 70.0
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 4.4e-127 458.4 296 71.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 9.8e-127 457.2 299 70.2
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 4.9e-126 454.9 280 74.6
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.4e-125 453.4 296 71.6
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.8e-125 453.0 400 58.2
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 2.4e-125 452.6 295 70.8
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 3.5e-124 448.7 277 74.0
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-123 446.0 286 73.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 4.0e-120 435.3 306 68.0
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 1.3e-118 430.3 306 69.0
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 5.4e-117 424.9 308 67.9
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.9e-114 416.4 246 79.3
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.9e-114 416.4 275 69.1
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.3e-114 415.6 257 74.7
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 6.2e-113 411.4 287 69.3
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 6.2e-113 411.4 287 69.3
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 1.8e-112 409.8 319 62.7
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 3.1e-112 409.1 296 67.6
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 1.6e-108 396.7 240 76.7
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.1e-104 382.5 212 83.0
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.0e-103 379.8 211 83.4
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 4.9e-102 375.2 263 64.3
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 6.4e-102 374.8 267 65.2
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 2.4e-101 372.9 252 70.2
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 8.6e-99 364.4 281 63.7
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 2.1e-97 359.8 243 72.4
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.9e-94 349.4 202 79.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 3.8e-94 349.0 202 78.7
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.3e-90 335.5 252 66.3
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.8e-75 287.0 294 52.7
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 4.0e-72 275.8 195 69.7
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.5e-68 262.7 269 46.8
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.3e-67 260.0 258 48.8
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.1e-66 257.7 269 52.4
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.3e-57 227.6 263 45.6
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 8.2e-57 224.9 299 46.5
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.5e-55 219.2 128 76.6
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.0e-54 218.0 173 63.6
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.5e-50 204.1 141 69.5
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.1e-40 169.5 97 81.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 1.5e-39 167.5 162 57.4
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 3.3e-34 149.8 91 73.6
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 9.1e-32 141.7 105 62.9
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.3e-30 137.9 81 74.1
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.9e-29 134.0 66 84.8
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 6.3e-17 92.4 76 60.5
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 3.8e-14 83.2 56 66.1
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 3.0e-11 73.6 58 60.3
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 7.0e-08 62.4 40 70.0
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 3.5e-07 60.1 48 54.2
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 3.5e-07 60.1 33 75.8
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 3.5e-07 60.1 48 54.2
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 3.5e-07 60.1 48 54.2
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 4.6e-07 59.7 38 68.4


User provided reference genes

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