Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026160 Solanum pennellii HOM05D000046 ORTHO05D013288 5.1e-42 174.1 95 100.0
Solyc08g077560.4 Solanum lycopersicum HOM05D000046 ORTHO05D000667 7.4e-41 170.2 95 97.9
Solyc08g077630.3 Solanum lycopersicum HOM05D000046 ORTHO05D000667 7.4e-41 170.2 95 97.9
Sopen08g026130 Solanum pennellii HOM05D000046 ORTHO05D000667 6.3e-40 167.2 95 96.8
PGSC0003DMG400001853 Solanum tuberosum HOM05D000046 ORTHO05D000667 7.2e-36 153.7 94 90.4
CAN.G1445.13 Capsicum annuum HOM05D000046 ORTHO05D000667 1.2e-30 136.3 94 81.9
Peaxi162Scf00715g00119 Petunia axillaris HOM05D000046 ORTHO05D000667 1.2e-30 136.3 94 78.7
Nitab4.5_0011581g0010 Nicotiana tabacum HOM05D000046 ORTHO05D000667 6.5e-29 130.6 94 76.6
Nitab4.5_0001981g0040 Nicotiana tabacum HOM05D000046 ORTHO05D000667 4.2e-28 127.9 97 78.4
Hma1.2p1_1672F.1_g296880 Hydrangea macrophylla HOM05D000046 ORTHO05D000667 1.3e-13 79.7 91 51.6
Manes.17G022900 Manihot esculenta HOM05D000046 ORTHO05D000667 1.5e-12 76.3 55 69.1
Cc08_g01510 Coffea canephora HOM05D000046 ORTHO05D000667 7.2e-12 73.9 97 46.4
MD04G1053100 Malus domestica HOM05D000046 ORTHO05D000667 7.2e-12 73.9 57 68.4
Dinv25159 Davidia involucrata HOM05D000046 ORTHO05D000667 9.5e-12 73.6 93 48.4
MSTRG.13766 Avicennia marina HOM05D000046 ORTHO05D000667 1.2e-11 73.2 95 50.5
Dinv28894 Davidia involucrata HOM05D000046 ORTHO05D000667 1.2e-11 73.2 92 51.1
Oeu022285.1 Olea europaea HOM05D000046 ORTHO05D013288 1.6e-11 72.8 59 69.5
Oeu017315.1 Olea europaea HOM05D000046 ORTHO05D000667 3.6e-11 71.6 52 73.1
Prupe.5G052200 Prunus persica HOM05D000046 ORTHO05D000667 4.7e-11 71.2 58 65.5
DCAR_004516 Daucus carota HOM05D000046 ORTHO05D000667 1.4e-10 69.7 66 59.1
Gohir.D08G181700 Gossypium hirsutum HOM05D000046 ORTHO05D000667 1.8e-10 69.3 66 60.6
Actinidia31485 Actinidia chinensis HOM05D000046 ORTHO05D000667 3.0e-10 68.6 64 62.5
Lj2A252T55 Lonicera japonica HOM05D000046 ORTHO05D000667 3.0e-10 68.6 53 67.9
Gorai.004G190600 Gossypium raimondii HOM05D000046 ORTHO05D000667 4.0e-10 68.2 66 59.1
Aqoxy3G02592 Aquilegia oxysepala HOM05D000046 ORTHO05D000667 6.8e-10 67.4 65 58.5
RcHm_v2.0_Chr7g0206611 Rosa chinensis HOM05D000046 ORTHO05D000667 6.8e-10 67.4 65 58.5
RcHm_v2.0_Chr7g0207411 Rosa chinensis HOM05D000046 ORTHO05D000667 6.8e-10 67.4 65 58.5
Cfa012355 Carpinus fangiana HOM05D000046 ORTHO05D000667 8.8e-10 67.0 65 56.9
RcHm_v2.0_Chr0c22g0500451 Rosa chinensis HOM05D000046 ORTHO05D013288 8.8e-10 67.0 65 56.9
RcHm_v2.0_Chr7g0207191 Rosa chinensis HOM05D000046 ORTHO05D013288 8.8e-10 67.0 65 56.9
Haze_08340 Corylus avellana HOM05D000046 ORTHO05D000667 1.2e-09 66.6 65 56.9
RcHm_v2.0_Chr7g0206901 Rosa chinensis HOM05D000046 ORTHO05D013288 1.2e-09 66.6 75 54.7
Thecc.03G237300 Theobroma cacao HOM05D000046 ORTHO05D000667 1.2e-09 66.6 57 64.9
CANSAT21G2363 Cannabis sativa HOM05D000046 ORTHO05D000667 1.5e-09 66.2 55 69.1
Gohir.D11G027900 Gossypium hirsutum HOM05D000046 ORTHO05D000667 1.5e-09 66.2 52 67.3
Gorai.007G030500 Gossypium raimondii HOM05D000046 ORTHO05D000667 1.5e-09 66.2 52 67.3
MD06G1044400 Malus domestica HOM05D000046 ORTHO05D000667 1.5e-09 66.2 57 57.9
RcHm_v2.0_Chr0c22g0500531 Rosa chinensis HOM05D000046 ORTHO05D013288 1.5e-09 66.2 57 66.7
RcHm_v2.0_Chr7g0206811 Rosa chinensis HOM05D000046 ORTHO05D013288 1.5e-09 66.2 57 66.7
RcHm_v2.0_Chr7g0207121 Rosa chinensis HOM05D000046 ORTHO05D013288 1.5e-09 66.2 57 66.7
RcHm_v2.0_Chr7g0207471 Rosa chinensis HOM05D000046 ORTHO05D000667 1.5e-09 66.2 65 56.9
RcHm_v2.0_Chr7g0207261 Rosa chinensis HOM05D000046 ORTHO05D000667 2.0e-09 65.9 65 56.9
RcHm_v2.0_Chr7g0207591 Rosa chinensis HOM05D000046 ORTHO05D013288 2.0e-09 65.9 65 56.9
CSS0004207 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D000667 2.6e-09 65.5 64 53.1
Migut.O00362 Erythranthe guttata HOM05D000046 ORTHO05D000667 2.6e-09 65.5 57 64.9
Potri.003G085300 Populus trichocarpa HOM05D000046 ORTHO05D000667 2.6e-09 65.5 58 63.8
SGA_v2.0_scaffold6G03166 Striga asiatica HOM05D000046 ORTHO05D000667 2.6e-09 65.5 84 48.8
Migut.E00815 Erythranthe guttata HOM05D000046 ORTHO05D000667 3.4e-09 65.1 59 62.7
FAN04G1271 Fragaria x ananassa HOM05D000046 ORTHO05D000667 3.4e-09 65.1 57 63.2
RcHm_v2.0_Chr7g0206841 Rosa chinensis HOM05D000046 ORTHO05D013288 3.4e-09 65.1 65 56.9
RcHm_v2.0_Chr7g0207151 Rosa chinensis HOM05D000046 ORTHO05D013288 3.4e-09 65.1 65 56.9
FAN08G1207 Fragaria x ananassa HOM05D000046 ORTHO05D000667 4.4e-09 64.7 68 58.8
FAN18G2594 Fragaria x ananassa HOM05D000046 ORTHO05D000667 4.4e-09 64.7 68 58.8
Gohir.A12G212100 Gossypium hirsutum HOM05D000046 ORTHO05D000667 4.4e-09 64.7 68 57.4
CiPaw.12G056800 Carya illinoinensis HOM05D000046 ORTHO05D000667 5.7e-09 64.3 66 53.0
COL.COLO4_06699 Corchorus olitorius HOM05D000046 ORTHO05D000667 5.7e-09 64.3 52 67.3
Gohir.A11G029400 Gossypium hirsutum HOM05D000046 ORTHO05D000667 5.7e-09 64.3 52 65.4
RcHm_v2.0_Chr7g0206561 Rosa chinensis HOM05D000046 ORTHO05D000667 5.7e-09 64.3 65 55.4
Sabra03G0055400 Salix brachista HOM05D000046 ORTHO05D000667 5.7e-09 64.3 78 50.0
SGA_v2.0_scaffold20G09251 Striga asiatica HOM05D000046 ORTHO05D000667 5.7e-09 64.3 51 66.7
TWI81G0006 Tripterygium wilfordii HOM05D000046 ORTHO05D000667 5.7e-09 64.3 71 56.3
Gorai.008G230200 Gossypium raimondii HOM05D000046 ORTHO05D000667 7.5e-09 63.9 68 55.9
Lsat_1_v5_gn_6_95261 Lactuca sativa HOM05D000046 ORTHO05D000667 7.5e-09 63.9 81 43.2
Potri.001G149100 Populus trichocarpa HOM05D000046 ORTHO05D000667 7.5e-09 63.9 66 56.1
QL12p008007 Quercus lobata HOM05D000046 ORTHO05D000667 7.5e-09 63.9 67 53.7
Actinidia03410 Actinidia chinensis HOM05D000046 ORTHO05D000667 9.8e-09 63.5 93 44.1
CiPaw.11G084900 Carya illinoinensis HOM05D000046 ORTHO05D000667 9.8e-09 63.5 69 49.3
Ciclev10020507m.g Citrus clementina HOM05D000046 ORTHO05D000667 9.8e-09 63.5 65 56.9
Rhsim07G0119900 Rhododendron simsii HOM05D000046 ORTHO05D000667 9.8e-09 63.5 85 47.1
GSVIVG01013275001 Vitis vinifera HOM05D000046 ORTHO05D000667 9.8e-09 63.5 52 63.5
Duzib205G1327 Durio zibethinus HOM05D000046 ORTHO05D000667 1.3e-08 63.2 69 55.1
FvH4_5g20770 Fragaria vesca HOM05D000046 ORTHO05D000667 1.3e-08 63.2 68 58.8
Gohir.A08G161700 Gossypium hirsutum HOM05D000046 ORTHO05D000667 1.3e-08 63.2 66 56.1
Rhsim08G0222200 Rhododendron simsii HOM05D000013 ORTHO05D000667 1.3e-08 63.2 57 63.2
Actinidia10869 Actinidia chinensis HOM05D000046 ORTHO05D000667 1.7e-08 62.8 52 65.4
vmacro14115 Vaccinium macrocarpon HOM05D000046 ORTHO05D000667 1.7e-08 62.8 88 45.5
Gohir.D12G214600 Gossypium hirsutum HOM05D000046 ORTHO05D000667 2.2e-08 62.4 68 54.4
PGR042G0695 Punica granatum HOM05D000046 ORTHO05D000667 2.2e-08 62.4 78 41.0
TWI60G0254 Tripterygium wilfordii HOM05D000046 ORTHO05D000667 2.2e-08 62.4 65 53.8
TAR374G0240 Trochodendron aralioides HOM05D000046 ORTHO05D000667 2.2e-08 62.4 95 48.4
Actinidia25926 Actinidia chinensis HOM05D000046 ORTHO05D000667 2.8e-08 62.0 93 41.9
arahy.Tifrunner.gnm1.ann1.DG580Z Arachis hypogaea HOM05D000046 ORTHO05D000667 2.8e-08 62.0 51 60.8
arahy.Tifrunner.gnm1.ann1.WE50TT Arachis hypogaea HOM05D000046 ORTHO05D000667 2.8e-08 62.0 51 60.8
Glyma.17G149900 Glycine max HOM05D000046 ORTHO05D000667 2.8e-08 62.0 66 53.0
HanXRQChr03g0089581 Helianthus annuus HOM05D000046 ORTHO05D000667 2.8e-08 62.0 81 44.4
Atru.chr9.1150 Acer truncatum HOM05D000046 ORTHO05D000667 3.7e-08 61.6 67 53.7
Aqoxy7G00870 Aquilegia oxysepala HOM05D000046 ORTHO05D000667 4.9e-08 61.2 52 61.5
Zm00001eb103540 Zea mays HOM05D000046 ORTHO05D000667 4.9e-08 61.2 49 69.4
arahy.Tifrunner.gnm1.ann1.NZQX07 Arachis hypogaea HOM05D000046 ORTHO05D000667 6.3e-08 60.8 61 54.1
arahy.Tifrunner.gnm1.ann1.SCR8HV Arachis hypogaea HOM05D000046 ORTHO05D000667 6.3e-08 60.8 61 54.1
Medtr4g099130 Medicago truncatula HOM05D000046 ORTHO05D000667 6.3e-08 60.8 52 59.6
EL10Ac5g12221 Beta vulgaris HOM05D000046 ORTHO05D000667 8.3e-08 60.5 56 55.4
ClCG09G012560 Citrullus lanatus HOM05D000046 ORTHO05D000667 8.3e-08 60.5 52 59.6
ECA240G0340 Erigeron canadensis HOM05D000046 ORTHO05D000667 8.3e-08 60.5 69 46.4
Lj8A286T57 Lonicera japonica HOM05D000046 ORTHO05D048422 8.3e-08 60.5 50 62.0
Lj4g0023945 Lotus japonicus HOM05D000046 ORTHO05D000667 8.3e-08 60.5 61 54.1
Nitab4.5_0004273g0010 Nicotiana tabacum HOM05D000046 ORTHO05D000667 8.3e-08 60.5 60 56.7
PGR004G1905 Punica granatum HOM05D000046 ORTHO05D000667 8.3e-08 60.5 56 60.7
Manes.05G057600 Manihot esculenta HOM05D000046 ORTHO05D000667 1.4e-07 59.7 56 57.1
Nn6g33725 Nelumbo nucifera HOM05D000046 ORTHO05D000667 1.4e-07 59.7 61 59.0
TAR629G2007 Trochodendron aralioides HOM05D000046 ORTHO05D000667 1.4e-07 59.7 58 58.6
vmacro00378 Vaccinium macrocarpon HOM05D000046 ORTHO05D000667 1.4e-07 59.7 83 47.0
Duzib068G0267 Durio zibethinus HOM05D000046 ORTHO05D000667 1.8e-07 59.3 67 52.2
FAN13G0827 Fragaria x ananassa HOM05D000046 ORTHO05D000667 1.8e-07 59.3 86 50.0
Glyma.11G039300 Glycine max HOM05D000046 ORTHO05D000667 1.8e-07 59.3 51 58.8
MBI04_g20746_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000667 1.8e-07 59.3 68 54.4
Sabra01G0119000 Salix brachista HOM05D000046 ORTHO05D000667 1.8e-07 59.3 58 58.6
Ca_22028_v3 Cicer arietinum L. HOM05D000046 ORTHO05D000667 2.4e-07 58.9 70 50.0
MELO3C003345.2 Cucumis melo HOM05D000046 ORTHO05D000667 2.4e-07 58.9 51 60.8
Glyma.01G203500 Glycine max HOM05D000046 ORTHO05D000667 2.4e-07 58.9 54 55.6
Medtr5g013610 Medicago truncatula HOM05D000046 ORTHO05D000667 2.4e-07 58.9 49 63.3
Nitab4.5_0000563g0030 Nicotiana tabacum HOM05D000046 ORTHO05D000667 2.4e-07 58.9 60 56.7
VMungo0251G1999 Vigna mungo HOM05D000046 ORTHO05D000667 2.4e-07 58.9 70 48.6
MSTRG.17116 Avicennia marina HOM05D000046 ORTHO05D000667 3.1e-07 58.5 50 62.0
HanXRQChr14g0457411 Helianthus annuus HOM05D000046 ORTHO05D000667 3.1e-07 58.5 51 62.7
Os09g0533600 Oryza sativa ssp. japonica HOM05D000046 ORTHO05D000667 3.1e-07 58.5 49 65.3
MSTRG.28135 Avicennia marina HOM05D000046 ORTHO05D000667 4.1e-07 58.2 57 61.4
Ca_24620_v3 Cicer arietinum L. HOM05D000046 ORTHO05D000667 4.1e-07 58.2 49 63.3
Lj2g0008038 Lotus japonicus HOM05D000046 ORTHO05D000667 4.1e-07 58.2 58 55.2
Peaxi162Scf00793g00342 Petunia axillaris HOM05D000046 ORTHO05D000667 4.1e-07 58.2 60 56.7
Prupe.2G118500 Prunus persica HOM05D000046 ORTHO05D000667 4.1e-07 58.2 57 54.4
CAN.G756.23 Capsicum annuum HOM05D000046 ORTHO05D000667 5.4e-07 57.8 60 55.0
Cpa.g.c38386 Carica papaya HOM05D000046 ORTHO05D013288 5.4e-07 57.8 50 60.0
Potri.014G052700 Populus trichocarpa HOM05D000046 ORTHO05D000667 5.4e-07 57.8 65 53.8
Rhsim11G0120000 Rhododendron simsii HOM05D000046 ORTHO05D002559 5.4e-07 57.8 74 47.3
vmacro01695 Vaccinium macrocarpon HOM05D000046 ORTHO05D002559 5.4e-07 57.8 50 60.0
VMungo1215G2836 Vigna mungo HOM05D000046 ORTHO05D000667 5.4e-07 57.8 69 47.8
Glyma.05G067800 Glycine max HOM05D000046 ORTHO05D000667 7.0e-07 57.4 70 47.1
Phvul.002G002600 Phaseolus vulgaris HOM05D000046 ORTHO05D000667 7.0e-07 57.4 52 55.8
Rhsim01G0142500 Rhododendron simsii HOM05D000046 ORTHO05D000667 7.0e-07 57.4 51 60.8
RcHm_v2.0_Chr7g0206781 Rosa chinensis HOM05D000046 ORTHO05D013288 7.0e-07 57.4 46 67.4
TWI14G0174 Tripterygium wilfordii HOM05D000046 ORTHO05D000667 7.0e-07 57.4 61 52.5
HPP92_025426 Vanilla planifolia HOM05D000046 ORTHO05D000667 7.0e-07 57.4 52 59.6
GSVIVG01018334001 Vitis vinifera HOM05D000046 ORTHO05D000667 7.0e-07 57.4 49 61.2
Solyc01g088690.3 Solanum lycopersicum HOM05D000046 ORTHO05D000667 9.2e-07 57.0 64 50.0
Sopen01g035530 Solanum pennellii HOM05D000046 ORTHO05D000667 9.2e-07 57.0 64 50.0
AUR62018804 Chenopodium quinoa HOM05D000046 ORTHO05D000667 1.2e-06 56.6 56 53.6
MELO3C013888.2 Cucumis melo HOM05D000046 ORTHO05D000667 1.2e-06 56.6 60 51.7
CsaV3_3G002160 Cucumis sativus L. HOM05D000046 ORTHO05D000667 1.2e-06 56.6 60 51.7
Phvul.003G226700 Phaseolus vulgaris HOM05D000046 ORTHO05D000667 1.2e-06 56.6 70 45.7
Hund11301 Selenicereus undatus HOM05D000046 ORTHO05D000667 1.2e-06 56.6 56 48.2
EL10Ac1g00727 Beta vulgaris HOM05D000046 ORTHO05D000667 1.6e-06 56.2 88 43.2
CDE02G1930 Ceratophyllum demersum HOM05D000046 ORTHO05D000667 1.6e-06 56.2 52 57.7
ECA234G0073 Erigeron canadensis HOM05D000046 ORTHO05D000667 1.6e-06 56.2 87 44.8
MD02G1222400 Malus domestica HOM05D000046 ORTHO05D000667 1.6e-06 56.2 52 53.8
Sabra14G0039600 Salix brachista HOM05D000046 ORTHO05D000667 1.6e-06 56.2 51 56.9
PGSC0003DMG400001721 Solanum tuberosum HOM05D000046 ORTHO05D000667 1.6e-06 56.2 60 51.7
vmacro22643 Vaccinium macrocarpon HOM05D000046 ORTHO05D426824 1.6e-06 56.2 74 47.3
ClCG10G002070 Citrullus lanatus HOM05D000046 ORTHO05D000667 2.0e-06 55.8 60 51.7
DCAR_008313 Daucus carota HOM05D000046 ORTHO05D000667 2.0e-06 55.8 52 57.7
Lalb_Chr09g0329721 Lupinus albus HOM05D000046 ORTHO05D000667 2.0e-06 55.8 58 53.4
Lalb_Chr16g0386321 Lupinus albus HOM05D000046 ORTHO05D000667 2.0e-06 55.8 58 51.7
Ah.12g053830 Amaranthus hybridus HOM05D000046 ORTHO05D000667 2.7e-06 55.5 56 51.8
CSS0003872 Camellia sinensis var. sinensis HOM05D000046 ORTHO05D000667 2.7e-06 55.5 51 60.8
AUR62007198 Chenopodium quinoa HOM05D000046 ORTHO05D000667 2.7e-06 55.5 56 53.6
HanXRQChr13g0419191 Helianthus annuus HOM05D000046 ORTHO05D000667 2.7e-06 55.5 74 45.9
Psat4g076720 Pisum sativum HOM05D000046 ORTHO05D000667 2.7e-06 55.5 61 50.8
Sed0001410 Sechium edule HOM05D000046 ORTHO05D000667 2.7e-06 55.5 51 54.9
Sc26g0001730 Simmondsia chinensis HOM05D000046 ORTHO05D000667 2.7e-06 55.5 86 45.3
Ca_18079_v3 Cicer arietinum L. HOM05D000046 ORTHO05D000667 3.5e-06 55.1 51 56.9
COL.COLO4_12360 Corchorus olitorius HOM05D000046 ORTHO05D000667 3.5e-06 55.1 70 51.4
CsaV3_3G049710 Cucumis sativus L. HOM05D000046 ORTHO05D000667 3.5e-06 55.1 51 54.9
MD07G1093200 Malus domestica HOM05D000046 ORTHO05D000667 3.5e-06 55.1 52 53.8
A09p22820 Brassica napus HOM05D000046 ORTHO05D000667 4.5e-06 54.7 53 52.8
BraA09t37884Z Brassica rapa HOM05D000046 ORTHO05D000667 4.5e-06 54.7 53 52.8
Eucgr.D01188 Eucalyptus grandis HOM05D000046 ORTHO05D000667 4.5e-06 54.7 50 58.0
Lalb_Chr05g0220801 Lupinus albus HOM05D000046 ORTHO05D000667 4.5e-06 54.7 66 53.0
Atru.chr5.82 Acer truncatum HOM05D000046 ORTHO05D000667 5.9e-06 54.3 51 54.9
Eucgr.E00331 Eucalyptus grandis HOM05D000046 ORTHO05D000667 5.9e-06 54.3 61 50.8
Oeu004641.1 Olea europaea HOM05D000046 ORTHO05D000667 5.9e-06 54.3 51 62.7
Psat2g175360 Pisum sativum HOM05D000046 ORTHO05D000667 5.9e-06 54.3 49 57.1
Hund14467 Selenicereus undatus HOM05D000046 ORTHO05D000667 5.9e-06 54.3 56 50.0
THA.LOC104798345 Tarenaya hassleriana HOM05D000046 ORTHO05D000667 5.9e-06 54.3 69 47.8
TPR.G33914 Trifolium pratense HOM05D000046 ORTHO05D000667 5.9e-06 54.3 49 59.2
CiPaw.13G022700 Carya illinoinensis HOM05D000046 ORTHO05D000667 7.8e-06 53.9 58 51.7
Duzib268G1082 Durio zibethinus HOM05D000046 ORTHO05D000667 7.8e-06 53.9 61 52.5
Lsat_1_v5_gn_4_38360 Lactuca sativa HOM05D000046 ORTHO05D000667 7.8e-06 53.9 87 42.5
Lj9A550T73 Lonicera japonica HOM05D000046 ORTHO05D000667 7.8e-06 53.9 49 61.2


User provided reference genes

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