Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 4.6e-92 341.3 178 100.0
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.6e-89 332.8 178 96.6
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 2.3e-83 312.4 178 89.9
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.9e-82 309.3 178 88.8
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.2e-81 306.6 162 98.8
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.1e-81 305.8 178 88.8
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 6.8e-72 274.2 185 80.5
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 4.3e-66 255.0 182 74.2
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 2.4e-64 249.2 182 72.0
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 9.0e-64 247.3 179 72.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 3.4e-63 245.4 157 80.3
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 4.2e-61 238.4 155 78.1
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 4.2e-61 238.4 158 77.2
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.6e-60 236.5 178 71.3
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 4.6e-60 235.0 173 71.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 7.8e-60 234.2 158 75.9
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.3e-59 233.4 152 79.6
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 1.7e-59 233.0 158 77.2
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.5e-58 229.9 174 70.1
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 1.5e-58 229.9 158 75.3
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.5e-58 229.9 158 74.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.9e-58 229.6 181 68.0
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 3.3e-58 228.8 169 71.6
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 3.3e-58 228.8 168 70.2
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 3.3e-58 228.8 159 76.1
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 5.6e-58 228.0 174 70.1
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 5.6e-58 228.0 178 71.9
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 7.3e-58 227.6 168 70.2
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 7.3e-58 227.6 152 75.7
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 9.6e-58 227.3 159 74.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.3e-57 226.9 155 75.5
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 2.8e-57 225.7 156 74.4
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 3.6e-57 225.3 159 73.6
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 4.8e-57 224.9 154 76.0
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 4.8e-57 224.9 156 76.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 6.2e-57 224.6 164 70.7
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 8.1e-57 224.2 148 81.8
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.4e-56 223.4 158 70.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.8e-56 223.0 153 77.8
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.8e-56 223.0 159 74.2
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.8e-56 223.0 159 74.2
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.4e-56 222.6 163 70.6
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.4e-56 222.6 153 77.1
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.4e-56 222.6 159 74.2
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 3.1e-56 222.2 170 69.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 4.0e-56 221.9 158 72.2
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 6.9e-56 221.1 163 69.9
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 9.0e-56 220.7 159 70.4
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 1.2e-55 220.3 141 80.1
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.2e-55 220.3 156 73.1
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 2.0e-55 219.5 171 66.7
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 4.5e-55 218.4 156 73.7
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 4.5e-55 218.4 159 73.0
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 9.9e-55 217.2 156 71.8
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 9.9e-55 217.2 158 72.2
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.3e-54 216.9 141 78.0
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 2.2e-54 216.1 146 75.3
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 2.9e-54 215.7 163 69.3
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 6.4e-54 214.5 158 70.9
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 8.4e-54 214.2 153 71.9
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 8.4e-54 214.2 177 65.0
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 2.4e-53 212.6 151 72.2
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 2.4e-53 212.6 152 71.1
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 9.3e-53 210.7 154 69.5
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.2e-52 210.3 159 70.4
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.2e-52 210.3 153 71.2
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.1e-52 209.5 141 75.2
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 4.6e-52 208.4 137 78.1
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.0e-51 207.2 146 74.7
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.3e-51 206.1 154 69.5
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.3e-51 206.1 182 64.3
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 6.7e-51 204.5 153 68.6
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.7e-51 204.5 141 78.0
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 6.7e-51 204.5 140 73.6
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.1e-50 203.8 155 68.4
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 1.5e-50 203.4 123 81.3
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.5e-50 203.4 178 62.4
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 7.4e-50 201.1 141 73.0
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.3e-49 200.3 141 73.0
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.6e-49 199.9 155 67.1
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 6.2e-49 198.0 158 65.2
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.1e-48 197.2 141 70.9
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.8e-48 196.4 137 73.0
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.8e-48 196.4 146 71.2
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 2.4e-48 196.1 146 71.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 3.1e-48 195.7 148 68.9
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 6.9e-48 194.5 155 67.7
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 1.2e-47 193.7 137 73.7
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 3.4e-47 192.2 123 76.4
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 3.4e-47 192.2 154 64.9
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 5.8e-47 191.4 140 73.6
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 3.8e-46 188.7 140 72.9
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 3.8e-46 188.7 140 72.9
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 4.9e-46 188.3 150 64.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 4.9e-46 188.3 151 64.9
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 6.4e-46 188.0 142 71.1
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 6.4e-46 188.0 142 71.1
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.4e-45 186.8 135 73.3
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.9e-45 186.4 135 73.3
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 2.4e-45 186.0 142 69.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 2.4e-45 186.0 142 69.7
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 3.2e-45 185.7 132 75.8
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 3.2e-45 185.7 141 69.5
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 5.5e-45 184.9 142 69.7
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 6.0e-44 181.4 178 57.3
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.4e-42 174.5 108 80.6
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 9.6e-42 174.1 126 75.4
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 4.8e-41 171.8 140 64.3
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.2e-41 171.4 126 74.6
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.0e-40 168.7 105 81.9
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 5.3e-40 168.3 112 76.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 6.9e-40 167.9 110 76.4
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 9.0e-40 167.5 120 69.2
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 4.9e-38 161.8 99 80.8
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.8e-35 153.3 110 70.9
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 3.9e-35 152.1 126 64.3
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.1e-34 150.6 135 63.0
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.3e-33 147.1 118 62.7
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.6e-33 146.7 123 55.3
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.8e-33 145.2 99 75.8
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.8e-32 143.3 121 59.5
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.3e-30 137.1 110 64.5
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 1.3e-27 127.1 83 75.9
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 2.5e-26 122.9 77 80.5
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 6.5e-22 108.2 74 74.3
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.4e-19 100.5 129 43.4
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 5.1e-19 98.6 132 49.2
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 8.8e-19 97.8 129 44.2
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.1e-16 90.9 125 40.8
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 1.5e-15 87.0 95 52.6
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.0e-15 86.7 140 44.3
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 7.7e-15 84.7 51 78.4
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 1.7e-14 83.6 54 72.2
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 4.4e-10 68.9 50 70.0
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 4.1e-08 62.4 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 4.1e-08 62.4 48 66.7
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.2e-06 56.6 40 67.5


User provided reference genes

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