Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g026000 Solanum pennellii HOM05D001931 ORTHO05D001891 4.1e-62 241.1 115 100.0
Solyc08g077410.4 Solanum lycopersicum HOM05D001931 ORTHO05D001891 2.5e-59 231.9 115 96.5
Glyma.11G040300 Glycine max HOM05D001931 ORTHO05D001891 1.6e-29 132.9 123 53.7
MELO3C003366.2 Cucumis melo HOM05D001931 ORTHO05D001891 1.1e-27 126.7 137 47.4
HanXRQChr15g0493311 Helianthus annuus HOM05D001931 ORTHO05D001891 6.3e-26 120.9 108 55.6
COL.COLO4_17124 Corchorus olitorius HOM05D001931 ORTHO05D001891 1.8e-25 119.4 115 52.2
VMungo1215G0653 Vigna mungo HOM05D001931 ORTHO05D001891 2.6e-24 115.5 118 47.5
Gorai.004G189600 Gossypium raimondii HOM05D001931 ORTHO05D001891 1.0e-23 113.6 117 47.9
FAN13G2157 Fragaria x ananassa HOM05D001931 ORTHO05D001891 1.7e-23 112.8 119 47.1
Phvul.002G003400 Phaseolus vulgaris HOM05D001931 ORTHO05D001891 2.9e-23 112.1 110 49.1
Gohir.A08G160400 Gossypium hirsutum HOM05D001931 ORTHO05D001891 6.5e-23 110.9 117 47.0
Gohir.D08G180732 Gossypium hirsutum HOM05D001931 ORTHO05D001891 6.5e-23 110.9 117 47.0
Sc07g0008960 Simmondsia chinensis HOM05D001931 ORTHO05D001891 1.9e-22 109.4 119 45.4
Aa31LG2G13260 Aethionema arabicum HOM05D001931 ORTHO05D001891 4.2e-22 108.2 110 49.1
Medtr5g013865 Medicago truncatula HOM05D001931 ORTHO05D001891 4.6e-21 104.8 123 42.3
PSO541G4211 Papaver somniferum HOM05D001931 ORTHO05D001891 7.9e-21 104.0 117 41.0
PSO541G4670 Papaver somniferum HOM05D001931 ORTHO05D001891 1.3e-20 103.2 117 40.2
Prupe.5G049000 Prunus persica HOM05D001931 ORTHO05D001891 1.3e-20 103.2 109 45.9
TWI81G0442 Tripterygium wilfordii HOM05D001931 ORTHO05D001891 2.3e-20 102.4 114 45.6
Actinidia25935 Actinidia chinensis HOM05D001931 ORTHO05D001891 3.0e-20 102.1 110 46.4
PSO675G1583 Papaver somniferum HOM05D001931 ORTHO05D001891 5.1e-20 101.3 117 39.3
Sp1g28250 Schrenkiella parvula HOM05D001931 ORTHO05D001891 6.7e-20 100.9 118 46.6
AL1G46970 Arabidopsis lyrata HOM05D001931 ORTHO05D001891 1.1e-19 100.1 121 40.5
Carub.0001s3105 Capsella rubella HOM05D001931 ORTHO05D001891 3.3e-19 98.6 119 42.9
CARHR032100 Cardamine hirsuta HOM05D001931 ORTHO05D001891 9.7e-19 97.1 115 42.6
BcaB04g17963 Brassica carinata HOM05D001931 ORTHO05D001891 2.8e-18 95.5 118 41.5
A08p09120 Brassica napus HOM05D001931 ORTHO05D001891 3.7e-18 95.1 118 41.5
BraA08t32914Z Brassica rapa HOM05D001931 ORTHO05D001891 8.2e-18 94.0 118 41.5
Cc08_g01750 Coffea canephora HOM05D001931 ORTHO05D001891 1.1e-17 93.6 121 39.7
AT1G32710 Arabidopsis thaliana HOM05D001931 ORTHO05D001891 1.4e-17 93.2 113 44.2
Migut.J01214 Erythranthe guttata HOM05D001931 ORTHO05D001891 5.3e-17 91.3 114 42.1
MBI01_g34163_MAGBIO Magnolia biondii HOM05D001931 ORTHO05D001891 9.0e-17 90.5 104 43.3
arahy.Tifrunner.gnm1.ann1.T7XISY Arachis hypogaea HOM05D001931 ORTHO05D001891 2.0e-16 89.4 88 51.1
arahy.Tifrunner.gnm1.ann1.TXEI0G Arachis hypogaea HOM05D001931 ORTHO05D001891 2.0e-16 89.4 88 51.1
Thhalv10009443m.g Eutrema salsugineum HOM05D001931 ORTHO05D001891 2.9e-15 85.5 110 41.8
ClCG09G012420 Citrullus lanatus HOM05D001931 ORTHO05D001891 1.4e-14 83.2 45 84.4
Duzib068G1260 Durio zibethinus HOM05D001931 ORTHO05D001891 1.8e-12 76.3 43 81.4
BolC8t47957H Brassica oleracea HOM05D001931 ORTHO05D001891 4.3e-11 71.6 112 37.5
CsaV3_3G049600 Cucumis sativus L. HOM05D001931 ORTHO05D001891 4.3e-11 71.6 39 79.5
Lj2g0014865 Lotus japonicus HOM05D001931 ORTHO05D001891 4.3e-11 71.6 110 38.2
Sed0007326 Sechium edule HOM05D001931 ORTHO05D001891 2.4e-09 65.9 38 76.3
Os02g0791400 Oryza sativa ssp. japonica HOM05D001931 ORTHO05D001891 5.9e-08 61.2 50 44.0
Eucgr.E00322 Eucalyptus grandis HOM05D001931 ORTHO05D001891 1.0e-07 60.5 49 42.9
GSVIVG01013246001 Vitis vinifera HOM05D001931 ORTHO05D001891 3.8e-07 58.5 37 70.3
MD16G1261200 Malus domestica HOM05D001931 ORTHO05D001891 5.0e-07 58.2 52 42.3
PSO541G1285 Papaver somniferum HOM05D001931 ORTHO05D001891 5.0e-07 58.2 50 42.0
THA.LOC104809722 Tarenaya hassleriana HOM05D001931 ORTHO05D001891 5.0e-07 58.2 49 44.9
unitig_37.g12164 Utricularia gibba HOM05D001931 ORTHO05D001891 5.0e-07 58.2 49 42.9
Manes.18G064621 Manihot esculenta HOM05D001931 ORTHO05D001891 8.5e-07 57.4 49 44.9
Mapoly0098s0035 Marchantia polymorpha HOM05D001931 ORTHO05D001891 8.5e-07 57.4 65 38.5
PSO541G6291 Papaver somniferum HOM05D001931 ORTHO05D001891 8.5e-07 57.4 50 42.0
PRCOL_00002996 Prasinoderma coloniale HOM05D001931 ORTHO05D001891 8.5e-07 57.4 49 38.8
MELO3C011044.2 Cucumis melo HOM05D001931 ORTHO05D001891 1.4e-06 56.6 49 42.9
Os04g0498200 Oryza sativa ssp. japonica HOM05D001931 ORTHO05D001891 1.4e-06 56.6 49 40.8
ClCG08G011290 Citrullus lanatus HOM05D001931 ORTHO05D001891 2.5e-06 55.8 49 40.8
Potri.005G162100 Populus trichocarpa HOM05D001931 ORTHO05D001891 3.2e-06 55.5 49 40.8
Sabra05G0122500 Salix brachista HOM05D001931 ORTHO05D001891 3.2e-06 55.5 49 40.8
BcaC07g39162 Brassica carinata HOM05D001931 ORTHO05D001891 4.2e-06 55.1 85 32.9
BcaNung07231 Brassica carinata HOM05D001931 ORTHO05D001891 4.2e-06 55.1 85 32.9
A08p28510 Brassica napus HOM05D000219 ORTHO05D000226 4.2e-06 55.1 83 33.7
C08p21550 Brassica napus HOM05D001931 ORTHO05D001891 4.2e-06 55.1 85 32.9
BraA08t34779Z Brassica rapa HOM05D000219 ORTHO05D001891 4.2e-06 55.1 78 34.6
Carub.0001s2198 Capsella rubella HOM05D001931 ORTHO05D001891 4.2e-06 55.1 49 38.8
CsaV3_2G029850 Cucumis sativus L. HOM05D001931 ORTHO05D001891 4.2e-06 55.1 49 40.8
Psat0s1163g0240 Pisum sativum HOM05D001931 ORTHO05D001891 4.2e-06 55.1 49 40.8
Potri.002G100000 Populus trichocarpa HOM05D001931 ORTHO05D001891 4.2e-06 55.1 49 40.8
Sabra02G0078500 Salix brachista HOM05D001931 ORTHO05D001891 4.2e-06 55.1 49 40.8
Sopen12g029770 Solanum pennellii HOM05D001931 ORTHO05D001891 4.2e-06 55.1 81 32.1
unitig_578.g16190 Utricularia gibba HOM05D001931 ORTHO05D001891 4.2e-06 55.1 114 28.1
BcaB07g32256 Brassica carinata HOM05D000219 ORTHO05D001891 5.5e-06 54.7 49 38.8
Migut.N02880 Erythranthe guttata HOM05D001931 ORTHO05D001891 5.5e-06 54.7 49 38.8
MD13G1274100 Malus domestica HOM05D001931 ORTHO05D001891 5.5e-06 54.7 49 40.8
Manes.02G149600 Manihot esculenta HOM05D001931 ORTHO05D001891 5.5e-06 54.7 49 40.8
Nn1g00666 Nelumbo nucifera HOM05D001931 ORTHO05D001891 5.5e-06 54.7 110 32.7
SMO165G0136 Selaginella moellendorffii HOM05D001931 ORTHO05D001891 5.5e-06 54.7 50 38.0
Sc23g0000370 Simmondsia chinensis HOM05D001931 ORTHO05D001891 5.5e-06 54.7 49 40.8
AagrBONN_evm.TU.Sc2ySwM_228.994 Anthoceros agrestis HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 34.7
AL1G35970 Arabidopsis lyrata HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 38.8
AT1G22450 Arabidopsis thaliana HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 38.8
BolC8t49795H Brassica oleracea HOM05D001931 ORTHO05D001891 7.2e-06 54.3 85 34.1
FvH4_4g10230 Fragaria vesca HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 36.7
FAN07G1760 Fragaria x ananassa HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 36.7
FAN12G0794 Fragaria x ananassa HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 36.7
FAN12G3556 Fragaria x ananassa HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 36.7
FAN22G0567 Fragaria x ananassa HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 36.7
Manes.14G163500 Manihot esculenta HOM05D001931 ORTHO05D001891 7.2e-06 54.3 49 38.8
Aa31LG7G6370 Aethionema arabicum HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 38.8
arahy.Tifrunner.gnm1.ann1.U0VU98 Arachis hypogaea HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 36.7
BcaB03g14203 Brassica carinata HOM05D000219 ORTHO05D001891 9.4e-06 53.9 49 38.8
BcaC06g34965 Brassica carinata HOM05D000219 ORTHO05D000226 9.4e-06 53.9 49 38.8
A07p14430 Brassica napus HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 38.8
C07p21240 Brassica napus HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 38.8
BolC7t42650H Brassica oleracea HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 38.8
CDE05G1260 Ceratophyllum demersum HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 38.8
CBR_g32315 Chara braunii HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 34.7
Ciclev10002573m.g Citrus clementina HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 40.8
Nn2g12558 Nelumbo nucifera HOM05D001931 ORTHO05D001891 9.4e-06 53.9 50 36.0
Potri.018G099900 Populus trichocarpa HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 36.7
Prupe.1G522200 Prunus persica HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 40.8
Sed0002634 Sechium edule HOM05D001931 ORTHO05D001891 9.4e-06 53.9 49 38.8


User provided reference genes

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