Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 0.0e+00 1092.0 559 100.0
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 3.8e-312 1074.7 559 98.2
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 8.2e-297 1023.1 559 93.4
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 6.3e-289 996.9 559 90.9
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 4.4e-282 974.2 586 86.0
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 1.9e-277 958.7 497 98.0
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 7.5e-266 920.2 516 90.7
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 2.1e-244 849.0 559 77.5
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 9.2e-240 833.6 560 75.7
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 9.2e-240 833.6 560 76.6
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 1.2e-239 833.2 560 75.7
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 2.8e-236 822.0 560 73.9
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 2.3e-235 818.9 560 75.0
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 5.2e-235 817.8 559 75.3
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 2.0e-234 815.8 561 75.2
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 2.0e-234 815.8 561 73.8
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 3.4e-234 815.1 560 75.2
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 6.4e-233 810.8 559 75.3
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 4.1e-232 808.1 560 73.6
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 7.0e-232 807.4 557 74.0
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 7.0e-232 807.4 557 74.0
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 7.0e-232 807.4 561 74.0
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 9.2e-232 807.0 553 75.2
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 2.0e-231 805.8 556 75.0
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 4.6e-231 804.7 559 73.3
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 6.0e-231 804.3 560 72.3
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.3e-230 803.1 559 73.2
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 1.3e-230 803.1 562 73.0
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 1.3e-230 803.1 556 73.6
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.3e-230 803.1 560 73.0
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 1.7e-230 802.7 553 74.9
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 2.3e-230 802.4 562 73.7
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 5.0e-230 801.2 580 72.1
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 1.5e-229 799.7 561 73.4
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 1.6e-228 796.2 560 73.6
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.1e-228 795.8 561 72.9
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 4.7e-228 794.7 560 72.7
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 6.2e-228 794.3 560 72.7
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.1e-227 793.5 578 70.8
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 4.0e-227 791.6 561 72.9
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 4.0e-227 791.6 559 73.5
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 1.5e-226 789.6 560 71.8
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 2.0e-226 789.3 562 73.0
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 4.4e-226 788.1 562 73.0
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 7.5e-226 787.3 578 71.6
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 2.2e-225 785.8 562 72.4
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 6.4e-225 784.3 562 72.2
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 6.4e-225 784.3 561 72.5
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 2.4e-224 782.3 560 71.6
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 7.1e-224 780.8 562 71.9
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 9.2e-224 780.4 557 72.2
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 1.6e-223 779.6 560 72.5
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 1.6e-223 779.6 580 70.0
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 3.5e-223 778.5 560 70.9
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 3.5e-223 778.5 564 72.3
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 6.0e-223 777.7 559 71.4
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 1.7e-222 776.2 556 73.6
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 5.1e-222 774.6 562 70.6
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 6.6e-222 774.2 557 72.7
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.3e-221 771.9 539 75.0
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 7.3e-221 770.8 562 70.6
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 1.8e-219 766.1 562 70.3
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 5.2e-219 764.6 536 73.3
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 9.9e-218 760.4 569 69.6
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 2.2e-217 759.2 562 69.0
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 8.4e-217 757.3 559 70.7
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.1e-216 756.9 588 68.4
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 7.1e-216 754.2 568 70.2
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 7.8e-215 750.7 559 68.2
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 1.3e-214 750.0 561 69.3
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 2.3e-214 749.2 562 68.7
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 8.7e-214 747.3 567 69.1
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 2.8e-212 742.3 560 68.8
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.8e-211 739.6 560 68.0
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 5.2e-211 738.0 559 69.4
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 4.4e-210 734.9 561 69.3
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 5.8e-210 734.6 558 67.4
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 2.4e-208 729.2 537 70.9
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 9.3e-208 727.2 558 67.2
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 2.7e-207 725.7 565 67.1
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.1e-205 720.3 562 66.9
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.5e-205 719.9 560 68.4
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 1.9e-205 719.5 509 72.5
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 1.9e-205 719.5 560 66.8
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 5.6e-205 718.0 560 67.5
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.1e-204 716.1 498 73.3
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 2.8e-204 715.7 560 66.2
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 3.1e-203 712.2 563 65.9
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 5.8e-202 708.0 560 66.8
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 7.6e-202 707.6 560 65.9
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 9.9e-202 707.2 562 66.0
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 9.9e-202 707.2 500 73.0
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 2.2e-201 706.1 559 66.2
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 4.9e-201 704.9 494 72.7
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 5.4e-200 701.4 561 65.1
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 3.0e-198 695.7 561 65.2
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 1.1e-197 693.7 559 65.7
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 1.9e-197 693.0 560 65.9
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 6.9e-195 684.5 560 65.2
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 1.5e-194 683.3 560 65.0
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 3.4e-194 682.2 561 65.2
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 2.9e-193 679.1 559 64.8
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 8.4e-193 677.6 559 64.8
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 4.2e-192 675.2 560 64.6
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 4.2e-192 675.2 560 64.6
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 5.5e-192 674.9 558 64.7
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 6.7e-190 667.9 542 65.5
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.9e-189 666.4 553 62.7
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 2.4e-187 659.4 537 60.3
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.5e-186 656.8 555 62.0
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 6.3e-172 608.2 561 60.1
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 1.4e-168 597.0 428 72.4
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 2.2e-161 573.2 508 61.4
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 5.5e-160 568.5 443 66.8
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 9.7e-157 557.8 569 53.4
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 1.0e-153 547.7 400 72.2
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 3.8e-153 545.8 554 54.5
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 7.2e-152 541.6 454 64.1
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 2.6e-149 533.1 544 54.4
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 3.1e-147 526.2 404 64.6
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 1.3e-145 520.8 566 51.6
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 1.9e-144 516.9 571 52.4
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 4.5e-138 495.7 363 72.7
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 1.2e-119 434.5 544 47.8
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 4.0e-118 429.5 407 58.5
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 2.5e-112 410.2 300 72.0
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 4.0e-110 402.9 572 43.4
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 4.0e-110 402.9 568 45.6
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 1.7e-108 397.5 281 71.5
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 3.1e-102 376.7 545 43.7
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 2.3e-73 280.8 219 68.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.3e-71 275.0 487 39.4
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 9.1e-54 215.7 376 42.6
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 7.2e-51 206.1 142 75.4
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 7.4e-48 196.1 142 73.2
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 1.4e-46 191.8 287 42.5
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.1e-42 177.9 147 63.9
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 4.7e-42 176.8 114 71.1
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 7.7e-37 159.5 192 51.0
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 7.7e-37 159.5 292 35.6
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 2.7e-34 151.0 108 69.4
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 8.8e-33 146.0 101 70.3
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.2e-32 145.6 88 84.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.4e-22 111.3 154 45.5
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 9.1e-22 109.4 87 62.1
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 1.0e-20 105.9 77 64.9
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 8.9e-17 92.8 96 54.2
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 4.4e-16 90.5 87 58.6
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 7.5e-16 89.7 88 58.0
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 1.6e-13 82.0 204 30.4


User provided reference genes

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