Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.6e-228 795.0 396 100.0
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 5.4e-210 734.2 399 93.0
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 7.5e-204 713.8 398 90.7
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.0e-184 650.2 400 82.0
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 1.5e-183 646.4 398 83.7
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 6.4e-179 630.9 374 82.6
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.7e-131 473.4 396 58.8
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 7.2e-122 441.4 399 57.4
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 5.3e-117 425.2 393 55.5
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 7.0e-117 424.9 383 55.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 2.6e-116 422.9 393 55.2
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 2.2e-115 419.9 389 55.3
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 5.5e-114 415.2 393 54.2
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 2.8e-110 402.9 393 52.4
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 2.4e-109 399.8 354 53.1
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 9.1e-109 397.9 340 56.8
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 9.1e-109 397.9 470 46.8
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 1.0e-107 394.4 396 52.0
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.7e-107 393.7 372 51.9
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.0e-107 392.1 374 52.7
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 5.0e-107 392.1 344 52.6
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 6.5e-107 391.7 362 53.0
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 2.1e-105 386.7 333 55.0
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.0e-104 384.4 394 50.3
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 2.3e-104 383.3 381 52.5
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 5.2e-104 382.1 362 52.2
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 8.8e-104 381.3 388 52.6
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 4.4e-103 379.0 337 53.1
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 3.7e-102 375.9 403 49.4
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 4.8e-102 375.6 362 51.4
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 4.1e-101 372.5 374 50.5
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 9.1e-101 371.3 391 47.8
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 2.0e-100 370.2 219 83.6
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 7.7e-100 368.2 338 53.0
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 5.0e-99 365.5 368 51.1
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 2.5e-98 363.2 372 52.2
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 1.6e-97 360.5 361 49.9
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 4.7e-97 359.0 390 47.9
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 1.4e-96 357.5 361 50.1
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.8e-96 357.1 349 50.7
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 1.8e-96 357.1 371 49.3
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 5.2e-96 355.5 361 48.5
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 6.8e-96 355.1 382 48.2
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 8.9e-96 354.8 384 48.7
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 1.2e-95 354.4 364 48.6
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.2e-95 354.4 383 48.0
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 1.2e-95 354.4 371 47.4
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.5e-95 354.0 373 48.8
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 2.6e-95 353.2 381 48.3
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 5.7e-95 352.1 381 47.5
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 1.3e-94 350.9 367 49.3
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.2e-94 350.1 367 49.0
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 2.8e-94 349.7 368 49.5
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 6.3e-94 348.6 379 49.1
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 6.3e-94 348.6 367 48.5
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 1.8e-93 347.1 360 47.5
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 4.1e-93 345.9 367 48.5
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 4.1e-93 345.9 366 50.3
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 1.6e-92 344.0 367 50.1
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 2.0e-92 343.6 343 48.7
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.9e-91 339.3 393 47.1
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.9e-91 339.3 292 53.4
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 6.6e-91 338.6 386 46.4
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 6.6e-91 338.6 378 46.6
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 8.6e-91 338.2 374 47.6
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.6e-89 334.0 367 46.9
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.6e-89 334.0 391 47.8
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 3.6e-89 332.8 369 46.3
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 4.7e-89 332.4 371 48.5
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 5.2e-88 328.9 387 44.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 1.2e-87 327.8 355 48.5
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 3.4e-87 326.2 357 45.7
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 5.8e-87 325.5 380 44.2
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 7.5e-87 325.1 407 45.5
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 2.2e-86 323.6 383 46.2
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 1.4e-85 320.9 466 38.0
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 2.4e-85 320.1 383 45.4
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.4e-85 318.9 383 44.4
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 5.4e-85 318.9 368 48.6
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 7.0e-85 318.5 331 48.9
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.0e-84 317.0 390 43.6
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.5e-82 310.8 355 46.2
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 7.3e-82 308.5 375 44.5
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 6.2e-81 305.4 374 44.7
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.4e-79 299.7 408 43.1
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.0e-75 288.1 294 49.7
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 1.1e-74 284.6 341 44.3
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 3.1e-72 276.6 325 44.9
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 7.3e-66 255.4 328 40.2
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 3.6e-65 253.1 245 49.0
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 1.1e-64 251.5 259 48.3
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 3.4e-63 246.5 406 37.7
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 1.6e-60 237.7 356 35.4
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.1e-56 223.4 300 43.0
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 4.4e-55 219.5 182 54.9
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 4.9e-54 216.1 382 35.1
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.9e-53 214.2 200 55.0
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 9.3e-53 211.8 251 46.2
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 5.1e-51 206.1 360 34.2
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.8e-49 199.5 270 41.1
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 2.4e-48 197.2 138 74.6
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.9e-46 189.5 163 60.7
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.9e-43 179.9 248 40.3
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 3.9e-43 179.9 328 34.8
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.1e-40 170.2 131 62.6
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 1.9e-34 151.0 228 36.8
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 9.6e-34 148.7 246 33.3
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.0e-31 141.0 330 33.0
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 5.7e-26 122.9 204 34.3
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 8.2e-25 119.0 126 45.2
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 7.2e-21 105.9 185 36.2
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.4e-18 95.9 248 28.6
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 1.2e-15 88.6 91 41.8
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 1.9e-13 81.3 283 25.1
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 3.6e-12 77.0 86 36.0
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 1.8e-11 74.7 124 37.1
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.6e-10 70.9 71 40.8
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.6e-10 70.9 70 40.0
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 1.3e-06 58.5 111 35.1
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 2.2e-06 57.8 51 51.0


User provided reference genes

Program Settings