Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 9.0e-87 323.6 163 100.0
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.9e-85 318.5 163 98.2
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 6.0e-83 310.8 163 95.1
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.4e-63 246.5 163 76.7
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 2.4e-55 219.2 165 72.1
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.8e-50 203.0 163 63.8
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 4.4e-49 198.4 163 61.3
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 1.3e-48 196.8 164 62.2
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.8e-47 193.0 163 60.7
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.1e-47 191.8 164 60.4
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.6e-46 189.9 163 60.1
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 7.7e-46 187.6 163 55.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.3e-45 186.8 165 60.6
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 2.1e-43 179.5 164 57.3
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.1e-43 177.9 165 53.9
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 1.0e-42 177.2 163 52.8
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.3e-42 176.0 165 53.3
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.3e-42 176.0 165 53.3
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.3e-42 176.0 163 52.1
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 3.0e-42 175.6 165 56.4
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.2e-41 173.7 160 58.1
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 9.7e-41 170.6 164 55.5
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 1.7e-40 169.9 163 51.5
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 2.2e-40 169.5 163 50.3
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 2.8e-40 169.1 165 53.3
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 3.7e-40 168.7 163 55.8
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 3.7e-40 168.7 163 50.3
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 4.8e-40 168.3 164 53.0
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 4.8e-40 168.3 200 48.0
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 8.3e-40 167.5 168 50.0
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.4e-39 166.0 168 52.4
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 2.4e-39 166.0 164 51.8
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 5.3e-39 164.9 164 51.8
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 9.1e-39 164.1 165 53.9
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.2e-38 163.7 165 52.7
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 1.6e-38 163.3 166 53.0
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 2.0e-38 162.9 163 51.5
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.5e-38 162.2 165 52.1
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.9e-38 161.4 165 52.1
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 5.0e-37 158.3 166 49.4
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 8.5e-37 157.5 200 44.0
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.9e-36 156.4 160 48.1
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.9e-36 156.4 163 49.1
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.2e-36 155.2 165 47.9
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 4.2e-36 155.2 160 47.5
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.2e-36 155.2 171 47.4
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 5.5e-36 154.8 164 50.0
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 5.5e-36 154.8 163 47.9
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 2.1e-35 152.9 159 48.4
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 2.1e-35 152.9 159 48.4
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.1e-35 152.9 159 46.5
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 2.1e-35 152.9 163 50.9
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 3.6e-35 152.1 163 49.7
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.0e-34 150.6 163 46.6
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.4e-34 150.2 164 46.3
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.8e-34 149.8 160 46.9
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 2.3e-34 149.4 163 50.3
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 4.0e-34 148.7 164 47.6
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.2e-34 148.3 163 50.3
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 6.8e-34 147.9 159 45.9
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.8e-34 147.5 165 50.3
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 8.8e-34 147.5 163 48.5
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.2e-33 147.1 165 44.8
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.2e-33 147.1 161 50.9
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 1.5e-33 146.7 163 49.7
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.6e-33 146.0 163 49.7
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 2.6e-33 146.0 163 47.9
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.4e-33 145.6 163 49.1
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 4.4e-33 145.2 230 38.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 7.5e-33 144.4 175 47.4
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 7.5e-33 144.4 163 48.5
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 7.5e-33 144.4 160 46.2
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 9.8e-33 144.1 164 47.0
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.7e-32 143.3 164 47.0
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.8e-32 142.5 165 45.5
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 8.3e-32 141.0 116 59.5
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 1.4e-31 140.2 247 36.0
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 1.8e-31 139.8 159 46.5
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.4e-31 139.4 158 46.2
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 3.1e-31 139.0 163 47.2
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 4.1e-31 138.7 81 82.7
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 4.1e-31 138.7 160 44.4
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 5.4e-31 138.3 159 45.9
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 5.4e-31 138.3 159 45.9
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 5.4e-31 138.3 164 43.9
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 7.0e-31 137.9 172 43.6
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 7.0e-31 137.9 164 43.3
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.2e-30 137.1 164 45.7
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.5e-30 135.2 87 77.0
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 5.9e-30 134.8 161 44.7
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 5.9e-30 134.8 155 49.0
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 7.7e-30 134.4 159 45.3
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 1.3e-29 133.7 165 46.7
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 1.3e-29 133.7 160 46.9
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-29 133.3 159 45.3
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.7e-29 133.3 169 45.0
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 2.3e-29 132.9 158 43.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.8e-29 132.1 163 42.9
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 3.8e-29 132.1 163 42.9
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 3.8e-29 132.1 170 46.5
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 8.6e-29 131.0 161 44.7
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.9e-28 129.8 270 32.2
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 3.3e-28 129.0 167 42.5
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 7.2e-28 127.9 163 43.6
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.6e-27 126.7 161 46.0
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 2.1e-27 126.3 114 57.0
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 4.7e-27 125.2 164 43.9
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 3.0e-26 122.5 164 42.7
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 4.0e-26 122.1 106 54.7
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 5.2e-26 121.7 143 48.3
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 5.2e-26 121.7 192 40.1
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 8.9e-26 120.9 225 36.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 8.9e-26 120.9 193 39.9
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 8.9e-26 120.9 138 50.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.2e-25 120.6 95 67.4
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 1.3e-24 117.1 177 41.8
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.1e-23 114.0 181 37.0
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.8e-23 113.2 164 39.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 3.2e-23 112.5 160 43.1
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 4.1e-23 112.1 157 43.3
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 7.0e-23 111.3 159 40.9
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 7.0e-23 111.3 172 38.4
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.2e-22 110.5 81 64.2
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.5e-22 108.6 157 44.6
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 7.8e-22 107.8 156 45.5
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 7.8e-22 107.8 156 42.3
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 7.8e-22 107.8 158 42.4
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.3e-21 107.1 155 43.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-21 106.7 155 43.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.7e-21 106.7 155 43.2
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.3e-21 106.3 156 41.7
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.9e-21 105.9 158 39.2
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 3.9e-21 105.5 161 41.0
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 6.6e-21 104.8 171 37.4
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 8.6e-21 104.4 155 42.6
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.3e-20 102.1 154 42.2
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.3e-20 102.1 154 42.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 4.3e-20 102.1 155 43.2
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 4.3e-20 102.1 150 42.7
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.1e-19 99.8 158 40.5
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 2.1e-19 99.8 151 42.4
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 2.3e-18 96.3 100 53.0
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 8.9e-18 94.4 151 41.1
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 3.2e-15 85.9 160 35.6
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 5.4e-15 85.1 73 60.3
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.6e-14 82.0 78 55.1
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 4.6e-14 82.0 162 33.3
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 5.0e-13 78.6 79 46.8
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.1e-12 77.4 77 51.9
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 7.3e-12 74.7 88 44.3
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.7e-11 72.0 96 40.6
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 4.0e-10 68.9 148 31.8
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 1.5e-09 67.0 44 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 6.4e-08 61.6 100 36.0
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 5.4e-07 58.5 91 37.4
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.7e-06 56.2 81 38.3
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 7.8e-06 54.7 87 36.8


User provided reference genes

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