Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 9.6e-65 250.0 124 100.0
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 2.8e-64 248.4 124 99.2
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 1.5e-62 242.7 124 97.6
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 2.1e-56 222.2 124 89.5
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.0e-53 213.4 124 85.5
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 2.1e-43 179.1 122 73.0
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 2.1e-43 179.1 125 71.2
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 6.1e-43 177.6 125 70.4
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 2.3e-42 175.6 123 73.2
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 3.3e-41 171.8 123 69.9
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 4.8e-40 167.9 126 71.4
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 8.2e-40 167.2 123 66.7
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 1.4e-39 166.4 124 68.5
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.4e-39 166.4 122 67.2
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.4e-39 165.6 122 70.5
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.4e-39 165.6 122 67.2
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 5.3e-39 164.5 123 69.1
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 6.9e-39 164.1 126 67.5
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 9.1e-39 163.7 122 68.0
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 2.0e-38 162.5 122 67.2
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 2.0e-38 162.5 122 63.9
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 3.4e-38 161.8 125 66.4
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 3.4e-38 161.8 126 67.5
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 5.9e-38 161.0 130 63.1
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 7.7e-38 160.6 127 61.4
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 1.3e-37 159.8 126 61.9
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 2.2e-37 159.1 126 68.3
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 2.9e-37 158.7 128 62.5
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 3.8e-37 158.3 126 61.9
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 5.0e-37 157.9 126 61.9
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 5.0e-37 157.9 126 61.9
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 8.5e-37 157.1 125 64.8
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.9e-36 156.0 126 61.1
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.9e-36 156.0 122 66.4
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.9e-36 156.0 123 67.5
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 2.5e-36 155.6 134 58.2
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 5.5e-36 154.5 131 64.1
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 5.5e-36 154.5 126 62.7
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 9.4e-36 153.7 132 63.6
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 1.2e-35 153.3 130 62.3
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 7.9e-35 150.6 128 60.9
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 2.3e-34 149.1 132 62.1
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 2.3e-34 149.1 123 64.2
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 3.0e-34 148.7 130 59.2
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 6.7e-34 147.5 116 64.7
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 1.5e-33 146.4 128 60.2
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 1.5e-33 146.4 128 60.2
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.5e-33 146.4 125 64.0
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 7.4e-33 144.1 112 67.9
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 1.7e-32 142.9 136 58.1
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.2e-32 142.5 122 60.7
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 2.2e-32 142.5 122 60.7
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 2.2e-32 142.5 137 56.2
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 4.8e-32 141.4 124 58.9
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.8e-32 141.4 122 59.8
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 1.1e-31 140.2 130 53.8
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 2.4e-31 139.0 122 62.3
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 2.4e-31 139.0 124 59.7
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 1.6e-30 136.3 128 54.7
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 2.0e-30 136.0 135 54.8
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 5.9e-30 134.4 130 50.8
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 7.7e-30 134.0 130 55.4
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 1.0e-29 133.7 129 50.4
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 1.3e-29 133.3 130 53.1
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 1.7e-29 132.9 126 54.0
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 1.7e-29 132.9 132 48.5
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 3.8e-29 131.7 129 54.3
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 3.8e-29 131.7 133 57.1
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 6.5e-29 131.0 131 54.2
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 1.5e-28 129.8 131 52.7
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 2.5e-28 129.0 127 53.5
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 1.2e-27 126.7 114 54.4
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 1.2e-27 126.7 124 51.6
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 1.6e-27 126.3 131 51.1
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 4.7e-27 124.8 133 55.6
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.1e-27 124.4 127 51.2
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 8.0e-27 124.0 136 52.2
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.3e-26 122.5 123 56.9
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 5.2e-26 121.3 136 50.0
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 1.3e-24 116.7 138 49.3
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.2e-24 115.9 125 51.2
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 3.7e-24 115.2 120 52.5
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 8.2e-24 114.0 121 52.1
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 1.4e-23 113.2 122 50.0
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 2.4e-23 112.5 125 50.4
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 2.4e-23 112.5 125 50.4
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 5.3e-23 111.3 125 49.6
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 9.1e-23 110.5 125 48.0
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 1.2e-22 110.2 122 52.5
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 1.2e-22 110.2 137 46.7
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.8
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.8
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.8
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.8
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.0
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.8
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 1.6e-22 109.8 125 48.0
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 7.7e-22 107.5 125 50.4
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 7.7e-22 107.5 125 50.4
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 1.7e-21 106.3 125 47.2
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 1.7e-21 106.3 125 45.6
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 2.9e-21 105.5 125 44.8
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 2.9e-21 105.5 92 60.9
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 6.5e-21 104.4 125 47.2
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 6.5e-21 104.4 125 47.2
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 1.5e-20 103.2 125 48.0
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 1.9e-20 102.8 75 65.3
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 4.2e-20 101.7 129 45.7
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 4.2e-20 101.7 123 48.8
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 5.5e-20 101.3 123 52.0
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.1e-19 99.4 100 52.0
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 2.7e-19 99.0 126 48.4
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 1.8e-18 96.3 106 50.9
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 7.5e-17 90.9 135 40.7
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 7.5e-17 90.9 111 51.4
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 6.3e-16 87.8 107 47.7
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 1.1e-15 87.0 98 48.0
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 4.1e-15 85.1 92 47.8
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.5e-12 75.9 96 39.6
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 3.6e-11 72.0 123 42.3
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 6.8e-10 67.8 87 43.7
Ah.09g229040 Amaranthus hybridus HOM05D001618 ORTHO05D001486 4.1e-07 58.5 91 36.3
AUR62025305 Chenopodium quinoa HOM05D001618 ORTHO05D001486 7.0e-07 57.8 98 39.8
Ah.14g084670 Amaranthus hybridus HOM05D001618 ORTHO05D001486 2.7e-06 55.8 82 37.8
Lj4g0006286 Lotus japonicus HOM05D001618 ORTHO05D001486 4.5e-06 55.1 95 34.7
Gohir.A06G079500 Gossypium hirsutum HOM05D001618 ORTHO05D001486 5.9e-06 54.7 96 35.4
Gohir.D06G079100 Gossypium hirsutum HOM05D001618 ORTHO05D001486 5.9e-06 54.7 96 35.4
Pp3c1_8870 Physcomitrium patens HOM05D006772 ORTHO05D008367 5.9e-06 54.7 121 33.9
DCAR_011922 Daucus carota HOM05D001618 ORTHO05D001486 7.7e-06 54.3 82 37.8
Gorai.010G092200 Gossypium raimondii HOM05D001618 ORTHO05D001486 7.7e-06 54.3 96 35.4


User provided reference genes

Program Settings