Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.2e-264 913.3 439 100.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-261 906.0 439 98.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.4e-251 872.5 439 94.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.9e-248 862.1 434 94.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.3e-246 855.1 439 92.9
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.6e-231 805.8 439 86.8
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.6e-231 805.8 439 86.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.1e-231 805.4 439 86.1
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.0e-230 803.1 436 85.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.4e-230 802.7 435 85.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 6.8e-230 800.4 436 85.6
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 8.8e-230 800.0 435 86.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 3.4e-229 798.1 450 83.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 3.4e-229 798.1 435 85.7
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 5.7e-229 797.3 439 85.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 7.5e-229 797.0 433 85.5
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 7.5e-229 797.0 434 85.0
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.3e-228 796.2 438 84.9
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.7e-228 795.8 439 84.5
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 2.2e-228 795.4 434 86.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 4.8e-228 794.3 433 85.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.1e-227 793.1 436 84.6
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.8e-227 792.3 439 84.5
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 4.1e-227 791.2 438 83.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 7.0e-227 790.4 433 84.8
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-226 789.6 433 85.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-226 789.6 433 85.0
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.2e-226 789.6 435 83.4
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.0e-226 788.9 436 84.6
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.7e-226 788.5 435 84.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 3.5e-226 788.1 435 84.6
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 5.9e-226 787.3 436 84.4
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.0e-225 786.6 433 85.0
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.7e-225 785.8 439 83.4
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.3e-225 785.4 436 83.3
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.9e-225 785.0 434 83.9
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.9e-225 785.0 434 83.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.9e-225 785.0 436 83.7
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.9e-225 785.0 433 84.8
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 3.8e-225 784.6 495 75.6
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.8e-225 784.6 439 82.9
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.6e-225 783.5 431 84.7
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.5e-224 781.9 428 85.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 7.2e-224 780.4 436 84.2
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 9.5e-224 780.0 439 83.4
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.6e-223 779.2 433 84.1
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.8e-223 778.5 435 82.5
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.6e-223 778.1 433 83.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.6e-223 778.1 433 83.8
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.1e-223 777.3 439 82.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 8.0e-223 776.9 427 85.0
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.0e-222 776.5 427 84.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.4e-222 776.2 433 83.6
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 3.0e-222 775.0 439 80.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.0e-222 774.6 437 82.6
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 5.2e-222 774.2 427 84.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 8.9e-222 773.5 507 75.1
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.2e-221 773.1 435 81.8
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 2.0e-221 772.3 436 82.8
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.0e-221 772.3 437 82.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.0e-221 772.3 439 81.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 2.0e-221 772.3 436 81.2
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.0e-221 772.3 432 83.1
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.4e-221 771.5 435 83.0
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 4.4e-221 771.2 439 81.8
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.7e-220 769.2 439 80.9
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.7e-220 769.2 436 81.2
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 2.2e-220 768.8 436 81.9
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 8.3e-220 766.9 430 82.3
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.1e-219 766.5 442 81.9
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 1.4e-219 766.1 439 80.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 5.4e-219 764.2 473 77.0
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.2e-218 763.1 444 80.9
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.0e-218 762.3 439 81.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.5e-218 761.5 436 81.0
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.8e-218 760.4 437 82.2
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 2.9e-217 758.4 435 82.8
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 6.6e-217 757.3 439 81.3
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 3.3e-216 755.0 435 79.5
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.3e-216 755.0 433 81.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.1e-215 752.3 436 79.8
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.8e-215 751.9 521 72.0
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.2e-214 747.7 434 80.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.0e-213 745.7 434 80.6
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.4e-213 745.0 409 86.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 9.8e-213 743.4 434 79.3
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.7e-212 741.5 434 78.3
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.0e-211 737.3 435 81.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.7e-210 735.3 439 77.2
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 4.6e-210 734.6 420 83.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.0e-209 731.9 407 83.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 9.5e-208 726.9 407 84.0
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.2e-207 726.5 402 84.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 6.8e-206 720.7 434 79.0
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.5e-205 719.5 390 86.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.8e-197 691.0 434 73.7
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.1e-195 684.9 427 74.9
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.7e-193 679.5 436 72.0
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 6.2e-191 671.0 440 70.0
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 7.6e-189 664.1 426 73.0
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 6.4e-188 661.0 439 68.6
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 3.5e-186 655.2 439 67.2
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 7.3e-184 647.5 436 73.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 9.6e-184 647.1 427 69.8
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 6.2e-183 644.4 342 88.3
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.4e-181 638.3 433 67.2
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.1e-179 633.6 427 70.0
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.4e-179 631.3 330 88.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.1e-178 629.4 341 85.0
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.6e-176 621.3 438 65.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.8e-174 616.3 339 85.3
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.8e-172 608.6 390 74.6
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.7e-170 602.4 440 69.5
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.0e-169 600.5 355 80.6
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.8e-167 592.4 443 62.3
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 5.3e-166 588.2 432 62.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.4e-165 585.5 443 61.4
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.1e-162 576.2 439 62.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.5e-157 560.1 426 60.3
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.1e-150 535.4 337 73.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 4.1e-150 535.4 294 84.4
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.2e-149 533.9 354 70.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 6.7e-145 518.1 431 57.3
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 8.5e-140 501.1 381 66.4
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.3e-135 487.3 442 54.1
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.2e-120 437.6 224 92.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 2.3e-113 413.3 352 60.2
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.2e-107 392.5 241 76.8
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.2e-93 347.8 228 71.5
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.9e-79 300.1 192 70.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.3e-75 285.4 158 85.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.6e-74 283.1 151 84.8
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.4e-70 270.4 145 86.2
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.5e-67 261.2 197 67.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.0e-64 250.8 134 88.8
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.4e-63 245.7 235 57.9
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.3e-52 211.5 113 85.8
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 4.8e-50 203.0 107 82.2
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.8e-42 177.2 137 64.2
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.0e-36 158.7 88 84.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 7.4e-35 152.5 93 76.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 7.7e-32 142.5 204 40.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.9e-31 140.6 82 81.7
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 5.0e-31 139.8 165 46.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 6.7e-28 129.4 87 74.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.6e-24 117.5 67 74.6
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.5e-22 109.8 246 32.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.7e-21 106.7 63 79.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.1e-19 102.1 57 75.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.0e-19 101.3 72 61.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 4.5e-16 90.1 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 4.7e-13 80.1 96 45.8
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.3e-12 77.8 38 84.2
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 6.7e-12 76.3 35 100.0
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.4e-09 67.8 81 48.1
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 2.7e-08 64.3 208 27.4
MSTRG.22610 Avicennia marina HOM05D000617 ORTHO05D000478 3.5e-08 63.9 199 26.6
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 4.5e-08 63.5 69 53.6
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 6.5e-07 59.7 35 71.4
SalBow6G0654 Salvia bowleyana HOM05D000617 ORTHO05D000478 1.1e-06 58.9 185 25.9
PSO210G6674 Papaver somniferum HOM05D000617 ORTHO05D000478 1.5e-06 58.5 197 26.4
PSO210G4035 Papaver somniferum HOM05D000617 ORTHO05D000478 2.5e-06 57.8 187 24.6
THA.LOC104805922 Tarenaya hassleriana HOM05D000617 ORTHO05D000478 2.5e-06 57.8 218 24.3
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 2.5e-06 57.8 257 23.3
Mapoly0023s0037 Marchantia polymorpha HOM05D002051 ORTHO05D002041 7.2e-06 56.2 236 25.8
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 7.2e-06 56.2 317 21.1


User provided reference genes

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