Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 9.7e-261 902.9 438 100.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.9e-258 893.6 438 98.6
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 3.9e-238 827.8 434 91.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 6.5e-233 810.4 434 88.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.8e-225 784.6 434 86.6
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.9e-212 741.1 434 80.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.8e-211 739.2 434 80.6
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 5.6e-208 727.6 434 79.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 7.3e-208 727.2 432 79.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.6e-207 726.1 437 78.3
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 3.6e-207 724.9 432 78.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 8.0e-207 723.8 434 79.5
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 2.3e-206 722.2 434 77.9
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 5.2e-206 721.1 433 76.9
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.8e-206 720.7 434 78.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.0e-205 719.2 432 78.7
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.4e-205 718.0 434 77.2
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.4e-205 718.0 433 76.7
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 5.8e-205 717.6 432 77.3
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.7e-204 716.1 434 78.8
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.7e-204 714.9 434 77.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 4.9e-204 714.5 433 77.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 6.4e-204 714.1 435 76.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 8.3e-204 713.8 449 75.7
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 8.3e-204 713.8 432 78.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.1e-203 713.4 434 78.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.4e-203 713.0 435 77.5
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.9e-203 712.6 433 76.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-203 712.2 434 77.9
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 5.4e-203 711.1 434 77.0
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 7.0e-203 710.7 435 77.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 7.0e-203 710.7 435 77.0
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 9.2e-203 710.3 434 76.0
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.2e-202 709.9 432 77.3
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.6e-202 709.5 435 75.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.6e-202 709.5 435 75.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.0e-202 709.1 434 76.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.6e-202 708.0 432 77.5
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.7e-201 706.1 434 75.6
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.7e-201 706.1 435 75.2
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.7e-201 706.1 433 76.4
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 3.0e-201 705.3 433 76.4
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 8.6e-201 703.7 432 75.5
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-200 703.4 433 76.4
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.9e-200 702.6 427 77.0
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.9e-200 702.6 427 77.0
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.5e-200 702.2 434 76.7
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.5e-200 702.2 433 76.2
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.5e-200 702.2 433 76.2
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.3e-200 701.8 427 77.0
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 3.3e-200 701.8 427 76.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 3.3e-200 701.8 427 77.5
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 4.3e-200 701.4 434 75.6
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.3e-200 701.4 432 76.4
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.3e-200 700.7 433 76.0
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.8e-199 698.7 427 76.8
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 3.6e-199 698.4 427 76.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 3.6e-199 698.4 434 73.7
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.6e-199 698.4 430 75.6
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 3.6e-199 698.4 433 75.5
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 6.2e-199 697.6 434 76.7
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.1e-198 696.8 428 75.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.1e-198 696.8 428 76.4
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 1.4e-198 696.4 435 75.6
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.4e-198 696.4 430 75.6
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 3.1e-198 695.3 427 75.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.0e-198 694.9 442 75.6
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 8.9e-198 693.7 431 74.9
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.5e-197 693.0 433 75.8
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.5e-197 693.0 434 74.9
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.5e-197 693.0 435 75.6
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 4.4e-197 691.4 489 68.9
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 7.5e-197 690.6 434 76.0
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 9.8e-197 690.3 432 73.8
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.3e-196 689.9 432 75.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.7e-196 689.5 427 75.4
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.7e-196 689.5 427 75.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.9e-196 688.7 473 69.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 3.7e-196 688.3 442 74.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 4.9e-196 688.0 430 74.2
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 8.3e-196 687.2 429 74.6
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.1e-195 686.8 435 74.7
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.1e-194 682.6 428 73.6
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.7e-194 682.2 430 73.7
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 7.8e-194 680.6 428 75.5
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 2.5e-192 675.6 432 74.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 3.3e-192 675.2 505 66.7
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 8.1e-191 670.6 405 76.8
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 5.2e-190 667.9 435 71.5
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.2e-189 666.8 436 70.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.2e-189 666.8 519 63.8
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 4.4e-189 664.8 408 77.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 5.8e-189 664.5 434 70.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.5e-189 664.1 433 72.3
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.9e-188 662.1 403 76.9
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.4e-187 659.8 388 79.9
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 2.7e-186 655.6 403 75.9
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 6.0e-186 654.4 414 75.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.3e-185 653.3 430 70.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.1e-185 651.4 425 71.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.6e-183 645.2 431 70.1
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.2e-178 630.2 435 68.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.1e-178 629.4 425 68.2
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.3e-176 622.1 439 66.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 6.2e-175 617.8 425 68.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.4e-173 611.7 437 66.6
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.8e-173 611.3 437 66.8
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.6e-167 592.0 425 65.9
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 2.9e-164 582.4 340 79.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 8.4e-164 580.9 434 67.5
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.2e-163 578.6 438 64.8
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-161 571.6 334 80.2
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.6e-159 566.6 431 61.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-158 563.5 330 79.4
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 6.9e-158 561.2 386 71.2
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.4e-155 553.5 338 76.6
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 6.0e-154 548.1 425 58.6
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.3e-153 547.0 339 76.7
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 8.7e-153 544.3 355 73.2
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.8e-151 539.3 350 73.7
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.8e-149 531.6 433 63.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.0e-148 530.8 430 59.3
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.6e-133 479.6 431 54.3
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 2.6e-133 479.6 291 77.3
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-123 447.6 381 59.8
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.5e-99 367.5 226 77.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 7.2e-99 365.2 351 54.1
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.7e-93 346.7 241 68.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.9e-87 325.9 228 68.0
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 8.9e-73 278.5 190 67.9
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-68 264.2 176 68.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-67 261.2 157 78.3
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.1e-62 242.3 144 79.2
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.3e-59 232.3 197 62.4
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.4e-54 217.2 133 75.9
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.0e-53 212.6 229 53.3
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.2e-50 202.6 112 80.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.3e-46 188.7 107 78.5
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.1e-34 151.0 137 56.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.2e-31 141.0 93 72.0
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.8e-31 140.2 90 73.3
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.1e-28 129.8 82 72.0
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 8.7e-28 129.0 166 44.6
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 4.5e-24 116.7 67 73.1
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.0e-23 115.5 263 33.1
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 7.2e-22 109.4 204 34.8
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.3e-20 104.4 73 71.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.5e-19 101.7 66 66.7
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.3e-19 100.1 63 76.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 5.0e-15 86.7 117 44.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.0e-15 86.7 57 66.7
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 8.2e-10 69.3 49 65.3
FAN24G0773 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.1e-09 68.9 380 23.7
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-09 68.9 94 43.6
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 4.1e-09 67.0 383 23.0
FvH4_2g26640 Fragaria vesca HOM05D002051 ORTHO05D002041 7.0e-09 66.2 380 23.2
FAN27G1239 Fragaria x ananassa HOM05D002051 ORTHO05D002041 7.0e-09 66.2 379 21.9
Gohir.D01G181400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 2.0e-08 64.7 396 22.2
Gorai.002G221000 Gossypium raimondii HOM05D002051 ORTHO05D002041 2.0e-08 64.7 396 22.2
Migut.N03294 Erythranthe guttata HOM05D002051 ORTHO05D002041 2.6e-08 64.3 425 23.3
MBI06_g20721_MAGBIO Magnolia biondii HOM05D002051 ORTHO05D002041 7.7e-08 62.8 392 23.7
Nn5g28199 Nelumbo nucifera HOM05D002051 ORTHO05D002041 7.7e-08 62.8 385 22.1
Cfa015997 Carpinus fangiana HOM05D002051 ORTHO05D002041 2.2e-07 61.2 277 25.3
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 2.2e-07 61.2 34 79.4
Lsat_1_v5_gn_8_24621 Lactuca sativa HOM05D002051 ORTHO05D002041 2.2e-07 61.2 384 23.2
Phvul.008G164800 Phaseolus vulgaris HOM05D002051 ORTHO05D002041 2.2e-07 61.2 385 21.8
AUR62010193 Chenopodium quinoa HOM05D002051 ORTHO05D002041 2.9e-07 60.8 263 22.8
FAN20G0736 Fragaria x ananassa HOM05D002051 ORTHO05D002041 2.9e-07 60.8 180 26.1
Sc26g0000300 Simmondsia chinensis HOM05D002051 ORTHO05D002041 3.8e-07 60.5 387 23.5
SGA_v2.0_scaffold28G12007 Striga asiatica HOM05D002051 ORTHO05D002041 3.8e-07 60.5 383 24.0
THA.LOC104817223 Tarenaya hassleriana HOM05D002051 ORTHO05D002041 3.8e-07 60.5 387 21.4
HanXRQChr06g0164451 Helianthus annuus HOM05D002051 ORTHO05D002041 8.5e-07 59.3 181 26.0
unitig_744.g24556 Utricularia gibba HOM05D002051 ORTHO05D002041 1.1e-06 58.9 205 23.9
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 1.9e-06 58.2 278 22.7
Haze_00468 Corylus avellana HOM05D002051 ORTHO05D002041 2.5e-06 57.8 278 23.0
DCAR_017408 Daucus carota HOM05D002051 ORTHO05D002041 2.5e-06 57.8 247 25.9
Dinv33637 Davidia involucrata HOM05D002051 ORTHO05D002041 2.5e-06 57.8 278 23.0
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-06 57.4 86 40.7
SEGI_10744 Sequoiadendron giganteum HOM05D000617 ORTHO05D000478 4.2e-06 57.0 269 25.3


User provided reference genes

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