Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 4.3e-259 897.5 465 100.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.0e-257 891.0 465 99.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.8e-236 822.4 470 90.6
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.1e-209 731.9 463 84.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.8e-194 682.2 451 81.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.0e-188 663.7 413 84.0
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 9.9e-155 550.8 291 96.6
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.3e-151 540.4 471 60.7
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.6e-149 533.5 469 60.1
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 6.2e-149 531.6 471 59.4
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.8e-148 530.0 469 60.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.1e-148 529.3 463 60.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 9.0e-148 527.7 467 61.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.2e-147 527.3 476 59.5
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 4.9e-146 521.9 460 60.7
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 8.4e-146 521.2 464 60.6
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.4e-145 520.4 471 58.6
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 3.5e-144 515.8 464 58.6
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.7e-143 513.5 462 58.7
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.3e-143 513.1 456 60.7
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 6.6e-143 511.5 483 57.6
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 5.6e-142 508.4 463 60.9
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 9.6e-142 507.7 476 55.9
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.1e-141 506.5 463 58.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.1e-140 504.2 451 59.0
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.4e-140 503.8 471 56.3
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 9.0e-140 501.1 471 55.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.0e-139 500.0 471 58.0
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.6e-139 499.6 456 58.8
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.4e-139 499.2 473 56.0
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 7.6e-139 498.0 474 57.2
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 9.9e-139 497.7 464 57.1
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.2e-138 496.5 467 55.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.9e-138 496.1 471 58.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 4.9e-138 495.4 465 57.6
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.9e-137 493.4 438 61.4
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.2e-137 492.7 473 55.8
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 5.1e-135 485.3 467 55.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.1e-134 484.2 469 56.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.3e-134 482.6 410 62.0
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.1e-132 476.1 473 55.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.0e-132 475.7 476 55.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.0e-131 473.4 467 54.0
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.6e-131 473.0 476 55.3
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.8e-131 471.9 465 55.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.0e-130 471.1 467 55.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.2e-130 469.9 467 55.0
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.4e-130 468.0 265 89.4
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 7.1e-129 464.9 462 54.3
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 7.1e-129 464.9 468 54.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 5.1e-127 458.8 469 54.6
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.1e-126 457.6 497 52.3
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.3e-126 456.1 468 51.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 9.6e-126 454.5 467 52.9
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 1.6e-125 453.8 423 57.4
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.3e-125 451.8 467 53.1
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.1e-124 451.1 480 52.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.1e-124 451.1 473 51.6
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 9.0e-124 448.0 473 50.7
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 1.2e-123 447.6 380 62.1
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 4.5e-123 445.7 467 50.5
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.0e-122 444.5 466 51.5
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.3e-122 444.1 377 60.2
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.2e-122 443.4 471 53.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 2.9e-122 443.0 689 40.8
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.8e-122 442.6 468 50.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.8e-122 442.6 467 50.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.4e-121 440.7 469 53.7
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.5e-121 439.9 467 49.9
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 9.3e-121 438.0 467 49.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 6.1e-120 435.3 468 48.9
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.0e-119 434.5 460 53.5
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.3e-119 434.1 468 49.8
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.3e-119 434.1 468 49.8
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 6.7e-119 431.8 460 50.9
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.8e-117 425.6 464 51.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.8e-116 423.7 367 58.6
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 4.1e-116 422.5 434 51.8
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 2.0e-115 420.2 322 65.5
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 2.0e-115 420.2 391 57.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.6e-115 419.9 551 47.0
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.9e-113 413.7 397 53.9
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.5e-113 413.3 471 51.0
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 6.1e-112 408.7 478 51.0
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 9.7e-110 401.4 393 51.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.0e-106 389.0 552 44.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 2.1e-104 383.6 439 50.1
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 8.8e-103 378.3 478 46.0
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.6e-102 376.7 497 45.5
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 5.7e-102 375.6 440 46.8
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.8e-101 373.2 413 51.3
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.8e-100 370.5 355 55.5
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.6e-99 367.5 421 50.4
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.5e-99 365.9 291 63.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.5e-97 360.1 481 46.4
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.6e-96 357.5 389 51.9
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.8e-93 346.7 371 52.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 3.5e-91 339.7 511 45.0
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.7e-91 338.6 471 43.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.0e-90 338.2 359 51.0
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.2e-90 337.0 254 66.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 2.1e-88 330.5 285 60.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.4e-86 323.2 338 53.3
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 6.3e-85 318.9 350 49.4
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.2e-83 314.7 297 58.2
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.1e-80 303.9 446 40.1
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.4e-79 301.2 312 53.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.8e-79 300.8 377 46.4
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.2e-78 298.1 159 95.0
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.8e-76 290.8 240 61.7
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 8.0e-72 275.4 226 61.5
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.3e-71 273.9 312 52.9
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 7.0e-68 262.3 534 37.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 6.8e-63 245.7 294 48.3
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.4e-62 243.0 142 86.6
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.7e-59 233.8 303 46.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.3e-58 230.7 169 65.7
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.6e-43 179.9 355 40.3
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.3e-42 177.6 552 31.5
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 8.6e-42 175.6 142 67.6
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.3e-41 173.7 210 50.0
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.8e-38 162.9 563 29.0
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 4.2e-36 156.8 174 51.7
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 8.7e-34 149.1 105 66.7
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.1e-31 142.1 382 31.9
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-28 130.6 168 45.8
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.9e-20 104.8 64 78.1
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.2e-20 104.0 127 46.5
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 3.2e-20 104.0 130 44.6
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 5.5e-20 103.2 125 43.2
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 4.8e-16 90.1 139 41.0
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 8.1e-16 89.4 84 57.1
PGSC0003DMG400017506 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.1e-15 87.4 52 88.5
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.4e-13 79.3 72 54.2
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.4e-13 79.3 72 54.2
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.9e-12 78.2 72 52.8
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.5e-12 77.8 115 43.5
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.2e-12 77.4 81 49.4
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.1e-12 76.3 72 54.2
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.0e-10 70.9 106 43.4
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 3.0e-10 70.9 62 53.2
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 2.6e-06 57.8 45 64.4
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 7.6e-06 56.2 32 75.0


User provided reference genes

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