Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 2.6e-56 221.9 117 100.0
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 2.6e-56 221.9 117 100.0
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.6e-56 221.9 117 100.0
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 5.9e-56 220.7 117 98.3
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 8.5e-55 216.9 117 96.6
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.2e-54 214.5 117 94.9
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.5e-54 214.2 117 94.9
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 9.4e-54 213.4 117 94.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.1e-53 212.2 117 92.3
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.7e-53 211.8 117 94.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 3.6e-53 211.5 118 94.1
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 8.0e-53 210.3 117 92.3
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 92.3
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 93.2
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-52 209.5 117 91.5
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.4e-52 209.5 117 91.5
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 92.3
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 92.3
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.8e-52 209.1 117 92.3
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 5.2e-52 207.6 118 92.4
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 5.2e-52 207.6 117 89.7
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 6.7e-52 207.2 117 93.2
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.5e-51 206.1 112 92.9
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.0e-51 205.7 117 91.5
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.6e-51 205.3 117 91.5
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.6e-51 205.3 117 89.7
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 3.3e-51 204.9 118 90.7
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 3.3e-51 204.9 117 92.3
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 3.3e-51 204.9 117 89.7
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 4.4e-51 204.5 117 88.0
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 5.7e-51 204.1 118 90.7
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 5.7e-51 204.1 113 93.8
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 5.7e-51 204.1 114 90.4
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 5.7e-51 204.1 117 92.3
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 5.7e-51 204.1 113 92.0
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.5e-51 203.8 118 90.7
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.3e-50 203.0 117 92.3
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 91.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 1.7e-50 202.6 116 90.5
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.7e-50 202.6 114 89.5
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 91.5
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.2e-50 202.2 117 92.3
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 89.7
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 91.5
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 114 91.2
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 114 91.2
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 116 91.4
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.8e-50 201.8 113 91.2
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 3.7e-50 201.4 114 92.1
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 92.0
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.3e-50 200.7 118 90.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 118 89.8
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.2e-50 200.3 118 89.8
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.2e-50 200.3 118 89.8
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 8.2e-50 200.3 119 89.1
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 8.2e-50 200.3 117 91.5
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 8.2e-50 200.3 113 91.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.1e-49 199.9 116 88.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.1e-49 199.9 117 86.3
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.4e-49 199.5 119 89.1
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 91.5
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.4e-49 199.5 113 89.4
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.4e-49 199.5 118 87.3
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.8e-49 199.1 114 92.1
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 117 88.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 90.3
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 91.2
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 5.3e-49 197.6 113 90.3
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 7.0e-49 197.2 113 91.2
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 88.0
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 7.0e-49 197.2 117 88.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.1e-49 196.8 116 87.9
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.1e-49 196.8 116 87.9
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.1e-49 196.8 113 88.5
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 90.3
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 89.4
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 89.4
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 89.4
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.0e-48 195.7 117 88.9
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 113 90.3
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 89.4
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 88.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.7e-48 195.3 116 87.1
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 2.7e-48 195.3 117 86.3
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 3.5e-48 194.9 111 90.1
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 3.5e-48 194.9 112 89.3
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 4.5e-48 194.5 114 89.5
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 4.5e-48 194.5 114 89.5
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 4.5e-48 194.5 116 87.9
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 88.5
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 88.5
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 5.9e-48 194.1 113 90.3
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.9e-48 194.1 117 87.2
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 87.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 7.7e-48 193.7 113 87.6
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.0e-47 193.4 113 88.5
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 86.7
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 86.7
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 87.6
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.3e-47 193.0 113 86.7
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.3e-47 193.0 116 86.2
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.7e-47 192.6 113 87.6
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.7e-47 192.6 116 85.3
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 2.2e-47 192.2 117 83.8
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-47 192.2 117 86.3
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 3.8e-47 191.4 110 89.1
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 3.8e-47 191.4 117 86.3
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 5.0e-47 191.0 114 86.0
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 1.1e-46 189.9 112 87.5
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.5e-46 189.5 113 86.7
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 3.2e-46 188.3 116 83.6
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 4.2e-46 188.0 110 89.1
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 5.5e-46 187.6 153 71.9
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 7.2e-46 187.2 109 89.9
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 9.4e-46 186.8 117 83.8
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.2e-45 186.4 113 83.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 1.2e-45 186.4 114 81.6
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.7e-45 184.5 117 81.2
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.0e-44 183.3 113 84.1
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.0e-44 183.3 110 84.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.8e-44 182.6 123 81.3
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 3.0e-44 181.8 113 82.3
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 5.2e-44 181.0 113 82.3
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 8.8e-44 180.3 109 81.7
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.2e-43 179.9 113 82.3
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 3.4e-43 178.3 117 76.1
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 6.3e-42 174.1 114 73.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.6e-40 169.5 178 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 6.6e-39 164.1 107 74.8
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.9e-38 162.5 89 91.0
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.3e-38 161.8 122 77.9
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.6e-37 158.3 88 88.6
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.4e-36 156.4 197 49.7
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.5e-35 152.9 85 91.8
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 1.2e-32 143.3 81 88.9
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.6e-32 142.9 86 84.9
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.6e-32 142.9 103 76.7
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 2.7e-32 142.1 72 95.8
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 3.5e-32 141.7 85 84.7
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.0e-31 140.2 86 83.7
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.7e-31 139.4 82 87.8
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.7e-31 139.4 85 84.7
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.5e-30 135.6 82 86.6
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 2.1e-29 132.5 106 71.7
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 2.1e-29 132.5 106 71.7
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 6.1e-29 131.0 67 94.0
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.6e-27 125.6 74 93.2
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 9.8e-27 123.6 109 59.6
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.7e-26 121.7 70 90.0
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.4e-25 119.8 97 54.6
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.9e-25 119.4 80 80.0
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.7e-23 112.8 73 80.8
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 8.6e-23 110.5 83 71.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.0e-20 101.7 74 71.6
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 3.4e-19 98.6 105 62.9
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.0e-15 87.0 51 84.3
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.9e-09 66.2 48 72.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 2.7e-08 62.4 43 74.4
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 7.8e-08 60.8 40 77.5
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 7.8e-08 60.8 40 77.5
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.0e-07 60.5 61 59.0
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 3.0e-07 58.9 44 72.7
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.5e-06 55.8 44 68.2


User provided reference genes

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