Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 0.0e+00 1340.9 704 100.0
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 0.0e+00 1255.4 708 93.1
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 2.2e-270 935.6 739 69.7
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 5.0e-267 924.5 703 72.3
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 8.2e-254 880.6 740 65.9
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 2.2e-158 563.5 715 48.0
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.5e-149 533.5 278 98.6
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.3e-147 526.9 324 91.4
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.6e-138 496.9 726 42.6
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 5.5e-125 452.6 748 41.4
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 9.8e-122 441.8 720 42.1
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.0e-118 431.8 735 37.6
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 1.5e-117 427.9 735 40.0
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 7.3e-117 425.6 731 39.1
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.1e-112 411.8 729 37.9
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.2e-111 408.3 738 38.6
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.1e-107 395.2 719 37.3
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 6.8e-107 392.5 724 37.3
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 1.2e-106 391.7 668 38.5
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 1.5e-106 391.3 725 36.6
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 4.4e-106 389.8 789 37.5
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 4.9e-105 386.3 921 34.4
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 8.3e-105 385.6 728 38.7
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 5.4e-104 382.9 782 34.4
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 2.1e-103 380.9 710 40.0
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 1.0e-102 378.6 734 37.5
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.5e-101 374.8 714 36.8
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 7.3e-101 372.5 714 38.4
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.6e-100 370.2 717 36.4
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 6.2e-100 369.4 734 35.8
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 3.1e-99 367.1 734 34.3
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 5.2e-99 366.3 716 36.2
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 7.6e-98 362.5 900 33.8
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 9.9e-98 362.1 743 33.5
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.7e-97 361.3 738 37.7
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 2.9e-97 360.5 741 35.5
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 4.9e-97 359.8 732 34.8
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 6.4e-97 359.4 728 35.9
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.4e-96 357.5 745 35.4
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 3.2e-96 357.1 728 35.9
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 7.1e-96 355.9 732 35.5
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 7.1e-96 355.9 714 35.3
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 5.1e-94 349.7 720 37.2
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 1.1e-93 348.6 736 34.5
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 1.5e-93 348.2 724 36.3
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 1.5e-93 348.2 715 36.2
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 4.7e-92 343.2 729 33.3
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 6.2e-92 342.8 571 37.3
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.4e-91 341.7 714 35.7
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 4.0e-91 340.1 726 34.6
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 3.4e-90 337.0 715 34.8
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 3.4e-90 337.0 715 34.8
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 3.4e-90 337.0 715 34.8
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 7.6e-90 335.9 731 34.9
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 1.3e-89 335.1 697 36.7
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 2.9e-89 334.0 728 35.3
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 1.4e-88 331.6 728 35.2
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 3.2e-88 330.5 755 33.4
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 9.3e-88 328.9 798 33.2
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 9.3e-88 328.9 716 34.5
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 1.2e-87 328.6 731 35.0
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 1.2e-87 328.6 731 35.0
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 7.8e-87 325.9 671 35.8
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 1.7e-86 324.7 737 34.1
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 1.3e-84 318.5 715 35.0
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.6e-84 318.2 725 32.0
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.7e-81 308.1 746 33.8
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.9e-80 304.7 663 32.4
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 1.0e-78 298.9 738 33.1
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 6.6e-78 296.2 735 32.8
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 4.3e-77 293.5 693 32.3
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.1e-76 291.2 724 30.5
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 2.4e-75 287.7 538 36.2
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 7.6e-74 282.7 652 32.1
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 9.9e-74 282.3 587 33.0
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 8.4e-73 279.3 787 29.1
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.1e-72 278.9 508 35.4
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 1.4e-72 278.5 803 31.8
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 1.4e-72 278.5 724 30.7
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 4.2e-72 276.9 795 29.2
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 7.4e-69 266.2 328 47.3
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 1.6e-68 265.0 727 29.6
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 1.2e-66 258.8 273 49.1
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 4.5e-66 256.9 520 34.0
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 2.9e-65 254.2 653 30.3
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 2.9e-65 254.2 403 38.2
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.4e-64 251.9 351 41.9
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 6.7e-62 243.0 787 28.1
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 2.4e-51 208.0 645 28.1
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 6.1e-47 193.4 411 37.0
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 5.3e-43 180.3 505 29.3
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 6.9e-43 179.9 225 44.4
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.5e-40 171.4 414 32.6
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 7.2e-40 169.9 511 29.4
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 8.2e-36 156.4 151 57.6
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 9.1e-35 152.9 694 23.5
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 3.2e-32 144.4 425 32.2
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 7.5e-29 133.3 239 36.8
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 9.7e-29 132.9 190 45.3
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 5.0e-25 120.6 150 46.0
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.5e-24 119.0 138 49.3
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 1.9e-24 118.6 150 44.7
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 5.2e-22 110.5 355 29.0
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 7.0e-19 100.1 160 42.5
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 2.9e-17 94.7 612 21.1
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.0e-14 86.3 177 41.8
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 3.0e-14 84.7 297 30.6
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 8.8e-14 83.2 347 24.5
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 1.7e-12 79.0 295 25.1
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 2.4e-11 75.1 134 35.8
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 2.4e-11 75.1 148 40.5
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 5.9e-10 70.5 90 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4141 Anthoceros agrestis HOM05D006140 ORTHO05D007834 5.6e-08 63.9 373 20.9
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 7.2e-08 63.5 49 61.2
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 6.8e-06 57.0 84 45.2


User provided reference genes

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