Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 3.9e-99 364.8 180 100.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 3.9e-99 364.8 180 100.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.3e-98 361.7 180 98.3
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 4.3e-98 361.3 180 98.9
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 6.4e-94 347.4 180 95.0
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.9e-90 335.9 180 86.7
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.3e-89 333.2 180 86.7
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 2.1e-89 332.4 180 87.2
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 87.8
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.7
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 85.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 3.6e-89 331.6 180 86.7
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 4.8e-89 331.3 180 86.7
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 6.2e-89 330.9 180 87.2
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 8.1e-89 330.5 179 86.0
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 86.7
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 1.1e-88 330.1 180 86.7
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 86.1
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 86.1
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 86.1
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.0
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.1e-88 328.6 180 85.0
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 86.1
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.3e-88 327.8 180 85.6
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 83.9
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 85.0
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 85.6
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 84.4
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 84.4
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 4.5e-87 324.7 180 83.3
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 83.3
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 82.8
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 81.7
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 83.9
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.9e-86 322.0 180 82.8
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.9e-86 322.0 180 82.8
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 83.9
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 2.9e-86 322.0 180 82.8
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.8
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 4.9e-86 321.2 180 82.8
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 82.2
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 82.2
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 83.3
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 82.8
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 8.4e-86 320.5 180 81.7
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 82.8
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 82.8
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 81.7
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 82.2
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 81.7
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 7.1e-85 317.4 181 84.0
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 82.2
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 9.3e-85 317.0 180 80.6
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.1
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 80.6
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 80.6
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 2.1e-84 315.8 199 77.9
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 80.6
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 82.8
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 4.6e-84 314.7 180 81.7
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.9e-83 311.6 181 81.8
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 3.9e-83 311.6 180 79.4
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 6.7e-83 310.8 180 79.4
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.5e-82 308.9 206 73.8
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 3.3e-82 308.5 180 79.4
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 5.6e-82 307.8 181 80.1
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 9.6e-82 307.0 165 86.7
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 9.6e-82 307.0 159 93.7
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.6e-81 306.2 180 80.0
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 8.1e-81 303.9 180 78.9
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.8e-80 302.8 180 78.3
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 3.1e-80 302.0 203 72.4
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 4.0e-80 301.6 187 77.5
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 4.5e-79 298.1 180 78.9
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 1.7e-78 296.2 160 88.1
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 8.4e-78 293.9 159 89.3
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.9e-77 292.7 180 81.1
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 2.7e-76 288.9 160 86.9
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.3e-75 285.8 175 76.0
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 3.9e-75 285.0 174 75.9
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 8.7e-75 283.9 161 81.4
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 7.4e-74 280.8 180 75.0
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.6e-73 279.6 156 83.3
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 6.9e-72 274.2 172 79.1
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 2.0e-71 272.7 164 80.5
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 2.0e-71 272.7 177 70.6
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.6e-71 272.3 162 78.4
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 5.9e-71 271.2 167 76.0
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 5.9e-71 271.2 177 68.4
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.0e-70 270.4 160 76.9
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 3.9e-67 258.5 218 62.8
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.9e-66 256.1 139 83.5
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 2.5e-66 255.8 153 79.1
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.1e-64 250.4 175 64.0
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.4e-64 250.0 175 64.6
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.5e-63 246.5 181 71.8
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.7e-62 243.0 139 78.4
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.1e-58 230.3 171 60.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.5e-54 214.2 114 84.2
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 9.7e-50 200.7 174 52.3
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 9.7e-50 200.7 121 76.9
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.0e-47 193.0 147 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 2.3e-43 179.5 146 58.2
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.3e-42 175.6 185 53.0
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 3.3e-42 175.6 185 53.0
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.4e-40 169.5 115 76.5
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 1.0e-38 164.1 176 47.2
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.7e-38 163.3 96 79.2
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 2.9e-38 162.5 93 77.4
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 7.2e-37 157.9 174 43.7
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 3.0e-35 152.5 91 74.7
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.7e-33 145.6 116 59.5
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 1.1e-32 144.1 177 47.5
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 6.8e-27 124.8 82 68.3
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.2e-23 114.0 65 83.1
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 1.7e-22 110.2 99 56.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 5.6e-21 105.1 71 62.0
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 6.1e-20 101.7 100 57.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 6.8e-19 98.2 56 87.5
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 1.5e-18 97.1 56 82.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 1.2e-15 87.4 50 82.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-14 83.2 46 84.8
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 5.4e-08 62.0 57 56.1
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.7e-06 57.0 38 68.4


User provided reference genes

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