Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 3.6e-278 961.1 526 100.0
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 1.8e-274 948.7 526 98.5
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 7.8e-249 863.6 536 90.3
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 2.3e-224 782.3 503 84.5
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 3.3e-223 778.5 534 83.7
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 7.1e-218 760.8 537 83.8
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 1.8e-173 613.2 525 71.6
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 8.0e-161 571.2 502 63.9
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 2.5e-154 549.7 496 60.7
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 2.1e-153 546.6 500 62.0
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 4.7e-153 545.4 498 61.0
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 2.0e-148 530.0 498 59.2
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 9.5e-146 521.2 497 59.4
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 7.5e-143 511.5 498 58.2
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.2e-142 510.0 501 57.7
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 5.4e-141 505.4 498 58.0
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.5e-138 497.3 554 58.7
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 9.5e-138 494.6 499 57.1
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 4.7e-137 492.3 499 57.7
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 8.9e-136 488.0 501 57.3
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 2.6e-135 486.5 503 57.1
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 2.2e-134 483.4 498 55.6
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.4e-133 479.9 499 55.9
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 4.1e-133 479.2 499 55.9
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.3e-131 473.4 498 54.8
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 1.1e-130 471.1 497 55.3
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 4.0e-128 462.6 497 54.9
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 5.2e-128 462.2 494 53.2
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 6.8e-128 461.8 529 55.6
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-127 459.9 497 54.5
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 1.1e-125 454.5 556 50.7
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 2.4e-125 453.4 497 54.3
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 5.4e-125 452.2 497 53.1
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 7.1e-125 451.8 530 55.8
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 5.1e-123 445.7 496 53.4
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.5e-122 443.4 498 52.8
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 1.1e-120 438.0 525 51.2
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 1.4e-120 437.6 501 52.1
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.2e-119 434.5 557 49.0
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 3.4e-119 433.0 558 49.1
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.4e-119 432.6 557 48.8
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 3.8e-118 429.5 498 53.8
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 4.9e-118 429.1 464 54.1
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.4e-117 427.6 500 51.6
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 7.8e-116 421.8 499 51.9
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 5.6e-114 415.6 515 49.9
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 4.4e-111 406.0 501 50.9
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 5.4e-109 399.1 506 49.8
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 9.3e-109 398.3 501 49.9
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 6.0e-108 395.6 447 52.3
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 3.9e-107 392.9 433 55.2
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 8.7e-107 391.7 426 54.9
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 1.5e-106 391.0 499 49.3
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 2.5e-106 390.2 498 48.2
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 1.3e-105 387.9 496 47.6
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 1.3e-105 387.9 503 48.5
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 1.6e-105 387.5 583 44.1
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 2.8e-105 386.7 500 48.4
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 4.8e-105 386.0 504 48.8
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 6.9e-104 382.1 538 50.0
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 6.9e-104 382.1 538 50.0
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 1.2e-103 381.3 489 49.1
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 2.2e-102 377.1 505 49.7
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 6.4e-102 375.6 502 48.6
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 6.4e-102 375.6 501 47.3
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 1.4e-101 374.4 473 51.4
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 1.4e-101 374.4 500 47.6
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 2.1e-97 360.5 497 47.1
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 4.0e-96 356.3 443 49.7
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 2.1e-92 344.0 496 45.0
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 3.5e-92 343.2 355 55.8
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 3.7e-89 333.2 503 44.5
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 1.2e-87 328.2 423 51.3
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 2.0e-87 327.4 536 42.7
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 4.5e-87 326.2 424 48.6
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 2.9e-86 323.6 373 54.7
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 8.2e-73 278.9 421 47.0
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 9.1e-72 275.4 256 60.2
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 9.1e-72 275.4 375 46.4
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 6.1e-60 236.1 323 47.7
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 2.8e-41 174.1 320 42.2
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 1.1e-37 162.2 317 40.1
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 3.4e-34 150.6 246 40.7
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 7.3e-29 132.9 167 47.3
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 3.6e-28 130.6 565 28.5
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 3.1e-27 127.5 318 33.6
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 6.0e-23 113.2 79 75.9
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 7.3e-21 106.3 165 43.0
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 4.7e-20 103.6 72 75.0
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 1.8e-19 101.7 76 71.1
Hma1.2p1_0544F.1_g175540 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 7.5e-18 96.3 65 67.7
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 9.8e-18 95.9 235 34.5
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 2.9e-17 94.4 53 88.7
HanXRQChr03g0081141 Helianthus annuus HOM05D007238 ORTHO05D009206 1.4e-16 92.0 65 67.7
Cpa.g.sc90.43 Carica papaya HOM05D007238 ORTHO05D009206 4.3e-13 80.5 65 60.0
Actinidia14160 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.8e-12 77.8 44 84.1
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 1.1e-11 75.9 42 88.1
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 1.4e-11 75.5 667 26.5
arahy.Tifrunner.gnm1.ann1.DKTU9V Arachis hypogaea HOM05D007238 ORTHO05D009206 4.0e-11 73.9 292 28.8
arahy.Tifrunner.gnm1.ann1.HBQ3NA Arachis hypogaea HOM05D007238 ORTHO05D009206 1.9e-08 65.1 63 55.6
arahy.Tifrunner.gnm1.ann1.M9N5E0 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.9e-08 65.1 63 55.6
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 1.6e-07 62.0 45 68.9
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 3.5e-07 60.8 54 55.6


User provided reference genes

Program Settings