Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 1.2e-227 792.7 378 100.0
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 8.4e-221 770.0 378 97.4
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 3.9e-210 734.6 377 93.6
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 5.0e-181 637.9 375 80.8
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.1e-175 618.6 372 80.4
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.8e-168 595.5 372 78.0
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 2.0e-158 562.8 379 72.3
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 4.4e-153 545.0 365 70.4
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 4.1e-143 511.9 360 66.7
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 1.0e-141 507.3 354 66.9
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 6.6e-141 504.6 338 70.4
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 6.6e-141 504.6 365 64.9
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 9.5e-140 500.7 356 68.0
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 3.6e-139 498.8 361 66.8
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 8.9e-138 494.2 367 66.8
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 8.9e-138 494.2 328 69.2
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 2.0e-137 493.0 333 69.7
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 3.4e-137 492.3 340 68.5
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 4.4e-137 491.9 375 64.5
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 7.6e-137 491.1 339 67.8
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 4.9e-136 488.4 349 67.3
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 8.4e-136 487.6 330 69.1
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 8.4e-136 487.6 330 69.1
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 1.4e-135 486.9 395 60.8
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 3.2e-135 485.7 335 66.9
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 4.1e-135 485.3 336 67.3
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 7.1e-135 484.6 347 65.7
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 7.1e-135 484.6 354 65.3
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 7.1e-135 484.6 333 67.3
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 2.1e-134 483.0 360 64.4
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 2.7e-134 482.6 322 69.6
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 2.7e-134 482.6 353 64.0
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 3.5e-134 482.3 389 61.2
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 6.0e-134 481.5 336 66.7
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 1.3e-133 480.3 359 65.2
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 1.7e-133 479.9 330 67.9
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 6.6e-133 478.0 367 64.9
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.5e-132 476.9 320 67.8
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 1.9e-132 476.5 351 64.4
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 3.3e-132 475.7 363 63.1
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 4.3e-132 475.3 367 63.8
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.2e-131 473.8 326 69.0
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 2.8e-131 472.6 362 63.3
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 2.8e-131 472.6 340 65.0
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 3.6e-131 472.2 322 69.6
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 3.6e-131 472.2 322 69.6
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 8.1e-131 471.1 362 65.2
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 1.4e-130 470.3 363 64.7
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 1.8e-130 469.9 330 65.5
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.4e-130 469.5 322 69.3
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 8.9e-130 467.6 322 67.1
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 1.2e-129 467.2 378 60.6
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 3.4e-129 465.7 364 61.5
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 9.9e-129 464.2 354 63.8
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 6.4e-128 461.5 338 64.8
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 6.4e-128 461.5 357 63.0
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 1.1e-127 460.7 326 66.3
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 1.9e-127 459.9 345 64.1
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 2.4e-127 459.5 358 62.3
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.7e-126 456.1 355 62.5
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 6.0e-126 454.9 344 62.8
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 6.0e-126 454.9 325 65.5
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 1.0e-125 454.1 331 65.3
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 2.3e-125 453.0 322 65.2
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 5.1e-125 451.8 371 60.4
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 6.6e-125 451.4 324 64.2
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 3.3e-124 449.1 327 63.9
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 2.1e-123 446.4 324 63.9
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 3.6e-123 445.7 331 64.4
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 3.6e-123 445.7 421 55.6
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 6.2e-123 444.9 351 61.8
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 1.1e-122 444.1 323 65.0
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 3.4e-121 439.1 320 66.9
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 7.6e-121 438.0 343 62.4
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 7.6e-121 438.0 310 65.2
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.4e-119 433.0 320 62.8
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.4e-119 433.0 320 62.8
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 8.7e-117 424.5 272 75.4
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 2.0e-113 413.3 357 58.0
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 7.6e-113 411.4 355 55.8
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 2.9e-112 409.5 306 62.4
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 1.9e-111 406.8 322 59.3
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 3.5e-110 402.5 280 65.7
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 1.3e-109 400.6 280 66.4
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 2.3e-109 399.8 281 67.6
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 1.1e-108 397.5 276 65.9
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 8.1e-107 391.3 337 57.9
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 2.6e-105 386.3 280 64.3
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 1.1e-103 380.9 339 57.2
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 2.1e-102 376.7 365 53.2
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 7.9e-94 348.2 282 58.9
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 1.6e-91 340.5 343 50.7
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 4.6e-86 322.4 248 62.1
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 5.5e-63 245.7 156 69.9
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 3.6e-62 243.0 145 73.1
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 5.0e-56 222.6 277 42.6
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 2.8e-54 216.9 186 57.5
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.5e-52 211.1 271 45.8
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 2.0e-52 210.7 126 75.4
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 2.8e-51 206.8 339 37.8
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 4.9e-51 206.1 123 71.5
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 5.6e-47 192.6 148 62.2
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 1.1e-39 168.3 311 34.4
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 2.3e-32 144.1 298 32.6
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 2.5e-31 140.6 101 67.3
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 3.7e-27 126.7 247 32.0
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.1e-25 120.9 79 69.6
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 5.1e-16 89.7 64 64.1
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 8.7e-16 89.0 56 71.4
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 9.6e-15 85.5 104 42.3
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 6.2e-14 82.8 187 35.3
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 8.1e-14 82.4 95 48.4
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 6.9e-13 79.3 40 82.5
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 6.4e-11 72.8 271 24.0
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 1.4e-10 71.6 276 23.9
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.4e-10 71.6 272 23.9
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 2.4e-10 70.9 271 24.4
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 4.2e-10 70.1 272 23.2
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 4.2e-10 70.1 278 25.2
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 5.4e-10 69.7 276 25.7
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 5.4e-10 69.7 272 23.2
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 5.4e-10 69.7 272 22.4
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 7.1e-10 69.3 272 23.2
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 7.1e-10 69.3 273 24.2
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 9.3e-10 68.9 277 23.8
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 9.3e-10 68.9 321 20.9
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 2.1e-09 67.8 275 26.2
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 2.1e-09 67.8 142 30.3
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 2.1e-09 67.8 275 24.0
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 2.7e-09 67.4 143 30.1
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 2.7e-09 67.4 274 23.7
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 2.7e-09 67.4 91 42.9
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 2.7e-09 67.4 64 54.7
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 2.7e-09 67.4 271 22.5
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 3.5e-09 67.0 295 23.1
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 3.5e-09 67.0 302 22.8
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 3.5e-09 67.0 143 32.2
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 4.6e-09 66.6 296 23.6
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 4.6e-09 66.6 142 28.2
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 6.0e-09 66.2 325 24.3
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 6.0e-09 66.2 275 21.8
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 6.0e-09 66.2 276 24.6
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 7.8e-09 65.9 197 26.9
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 7.8e-09 65.9 274 22.3
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 1.0e-08 65.5 272 22.8
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 1.0e-08 65.5 272 22.8
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 1.0e-08 65.5 272 22.8
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 1.0e-08 65.5 296 24.7
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 1.0e-08 65.5 275 21.8
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.3e-08 65.1 142 29.6
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 1.3e-08 65.1 277 21.7
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.3e-08 65.1 282 24.1
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 2.3e-08 64.3 315 22.2
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 2.3e-08 64.3 273 20.9
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 3.0e-08 63.9 277 26.0
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 3.9e-08 63.5 275 24.7
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 3.9e-08 63.5 277 23.1
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 3.9e-08 63.5 320 22.5
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 5.1e-08 63.2 274 23.4
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 5.1e-08 63.2 284 23.6
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 6.6e-08 62.8 275 21.8
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 6.6e-08 62.8 276 23.6
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 6.6e-08 62.8 320 22.5
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 6.6e-08 62.8 276 24.6
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 6.6e-08 62.8 276 22.1
EL10Ac5g10492 Beta vulgaris HOM05D004978 ORTHO05D005621 8.7e-08 62.4 142 28.9
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 8.7e-08 62.4 278 24.5
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.1e-07 62.0 276 22.8
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 1.1e-07 62.0 278 23.4
MCO05G292 Micromonas commoda HOM05D004419 ORTHO05D005480 1.5e-07 61.6 141 26.2
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.9e-07 61.2 273 23.1
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.9e-07 61.2 276 23.6
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.9e-07 61.2 141 28.4
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 2.5e-07 60.8 275 23.3
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 3.3e-07 60.5 143 29.4
Mapoly0061s0019 Marchantia polymorpha HOM05D002457 ORTHO05D008732 4.3e-07 60.1 271 23.6
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 7.3e-07 59.3 297 20.9
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 9.6e-07 58.9 278 21.9
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 1.3e-06 58.5 296 22.6
HPP92_027617 Vanilla planifolia HOM05D004978 ORTHO05D005621 1.3e-06 58.5 145 26.2
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 1.6e-06 58.2 277 24.2
Cre12.g485950 Chlamydomonas reinhardtii HOM05D002457 ORTHO05D008732 2.8e-06 57.4 276 25.7
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 2.8e-06 57.4 322 23.3


User provided reference genes

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