Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1559.3 784 100.0
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1546.2 784 99.2
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1441.8 784 92.2
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1251.5 779 78.9
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1246.9 782 79.9
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1246.1 772 79.7
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1241.1 772 79.9
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1239.9 771 79.5
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1236.5 735 85.7
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1234.9 772 78.8
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1233.4 775 79.4
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1231.9 780 77.8
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1229.9 768 78.9
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1228.4 767 78.2
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1227.6 772 78.9
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1226.1 768 78.6
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1224.5 768 78.4
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1220.7 809 76.1
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1218.4 813 75.8
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1217.6 772 77.8
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1217.2 774 77.1
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1214.9 774 77.0
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1206.8 769 76.9
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1205.3 821 73.6
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1202.6 778 76.1
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1201.8 780 76.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1195.6 770 75.7
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1195.3 770 75.6
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1194.5 780 76.2
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1194.1 775 75.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1191.0 776 76.0
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1189.1 770 76.4
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1186.0 768 76.8
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1186.0 768 76.0
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 778 75.3
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1179.5 771 75.7
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1178.7 774 74.4
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1178.7 770 75.6
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1177.5 761 77.1
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1177.5 757 77.4
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1176.4 767 75.7
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1176.0 769 75.2
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1174.5 753 76.1
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 772 76.2
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1170.2 773 74.6
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1167.5 772 75.3
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1166.4 759 76.8
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 769 74.4
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 767 75.0
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1164.1 770 74.7
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1156.0 774 74.4
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1153.3 756 76.7
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1152.5 771 73.7
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1149.8 768 74.1
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1147.5 772 74.0
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1144.8 772 73.7
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1142.9 773 72.8
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1142.1 771 73.8
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1140.6 882 67.8
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1138.3 773 73.6
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1137.1 771 71.7
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1136.7 773 72.2
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 773 71.8
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1134.4 771 71.9
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1133.6 771 71.5
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1132.9 774 71.6
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1132.5 770 73.0
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 773 71.7
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 771 71.6
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1130.2 785 72.6
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 0.0e+00 1129.8 634 90.9
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 0.0e+00 1129.0 662 87.5
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1128.2 767 72.0
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1127.9 769 71.7
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 788 72.6
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1121.3 769 71.8
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 777 70.7
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1113.2 766 72.2
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1112.4 768 71.5
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1111.7 771 70.6
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1109.4 745 73.3
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 771 69.9
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1098.2 767 69.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1097.0 776 69.5
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 777 68.6
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1079.7 679 77.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 0.0e+00 1079.3 783 69.7
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.0e-309 1065.4 695 75.3
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 7.6e-309 1063.5 777 67.4
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 1.0e-308 1063.1 775 67.7
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 4.6e-306 1054.3 780 67.2
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 9.7e-304 1046.6 782 67.0
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.7e-303 1044.6 775 67.5
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.8e-302 1042.3 758 70.2
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.9e-299 1032.3 766 67.9
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 6.1e-298 1027.3 692 75.1
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 1.1e-294 1016.5 761 68.9
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 8.5e-292 1006.9 738 68.8
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 7.2e-291 1003.8 663 75.4
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.7e-287 992.6 743 65.5
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 1.6e-285 986.1 748 68.2
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 3.2e-283 978.4 766 62.4
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 8.0e-282 973.8 766 62.9
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 6.3e-279 964.1 763 63.6
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.5e-275 953.0 782 64.6
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 2.0e-253 879.4 698 63.5
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 7.8e-245 850.9 644 65.8
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 7.8e-245 850.9 661 65.2
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.7e-237 825.9 591 71.6
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 5.8e-232 808.1 561 70.2
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.4e-224 781.9 752 57.3
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 7.6e-224 781.2 512 75.2
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 6.0e-205 718.4 439 80.6
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.1e-189 666.8 446 74.7
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.5e-150 537.0 349 74.8
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.8e-148 530.8 611 49.8
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 2.6e-147 526.9 371 72.2
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.2e-121 438.7 359 60.7
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.9e-118 431.0 272 76.8
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 3.8e-98 363.6 260 69.6
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 7.1e-97 359.4 248 71.8
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.5e-75 288.5 357 47.1
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.9e-75 286.6 190 71.1
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.0e-74 285.8 266 58.3
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.2e-73 280.8 260 61.5
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-69 268.9 213 66.7
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-67 261.9 252 57.1
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 7.7e-67 259.6 157 79.0
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 7.9e-64 249.6 141 83.7
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.8e-60 238.4 222 54.5
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.1e-60 237.3 141 80.1
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 9.7e-54 216.1 117 92.3
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-52 211.8 117 90.6
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 9.4e-49 199.5 149 63.1
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 5.7e-46 190.3 156 64.1
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-45 189.1 204 49.5
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.3e-45 189.1 109 81.7
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 4.5e-43 180.6 117 76.9
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 5.0e-42 177.2 117 74.4
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.0e-39 167.9 105 73.3
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 6.8e-39 166.8 117 67.5
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.2e-38 166.0 103 78.6
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.2e-37 161.8 97 76.3
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.4e-36 158.3 90 81.1
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.5e-33 149.1 95 71.6
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.2e-31 140.6 82 80.5
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.6e-30 138.3 95 72.6
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.6e-30 138.3 101 70.3
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.6e-30 138.3 101 70.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 7.5e-30 136.7 101 68.3
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.3e-29 136.0 86 76.7
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.1e-28 132.9 82 74.4
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.4e-28 132.5 104 64.4
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.3e-25 121.3 218 39.0
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 4.3e-25 120.9 77 74.0
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.6e-24 117.9 218 38.5
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.7e-21 109.0 74 64.9
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.7e-21 107.8 86 62.8
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.0e-18 99.8 163 38.7
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 7.5e-14 83.6 77 54.5
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.7e-13 81.3 55 72.7
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 1.2e-11 76.3 175 35.4
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.1e-11 75.5 45 75.6
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 4.6e-11 74.3 37 81.1
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 5.1e-10 70.9 56 64.3
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 6.8e-07 60.5 29 86.2
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.5e-06 59.3 43 58.1
arahy.Tifrunner.gnm1.ann1.H1NXHC Arachis hypogaea HOM05D000009 ORTHO05D000008 3.4e-06 58.2 38 76.3


User provided reference genes

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