Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.5e-210 736.1 417 100.0
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 7.4e-210 733.8 417 99.8
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.3e-206 723.0 417 98.3
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 6.1e-156 554.7 425 77.9
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.6e-142 508.1 278 89.2
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.4e-138 495.4 421 63.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.5e-135 485.7 422 74.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.1e-131 472.6 422 60.4
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.9e-128 463.4 421 60.1
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 3.3e-125 452.6 421 64.1
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 4.0e-123 445.7 415 62.9
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.2e-121 439.9 501 51.7
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.9e-121 439.5 298 72.8
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.4e-120 437.2 271 78.2
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.4e-120 436.4 298 71.1
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.2e-119 434.1 288 73.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.6e-119 433.7 259 79.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.6e-119 432.2 256 80.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 4.6e-119 432.2 421 62.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 6.0e-119 431.8 420 60.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.3e-118 430.6 256 80.1
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.7e-118 430.3 299 72.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.7e-118 430.3 255 80.4
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.9e-118 429.1 263 77.9
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 5.1e-118 428.7 257 77.8
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 8.7e-118 427.9 272 75.0
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.1e-117 427.6 257 77.4
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.5e-117 427.2 418 56.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.9e-117 426.8 256 78.9
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.8e-116 422.9 257 79.8
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.8e-116 422.9 423 55.1
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 3.6e-116 422.5 274 73.7
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 6.2e-116 421.8 275 75.6
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 6.2e-116 421.8 422 55.5
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 8.1e-116 421.4 417 56.1
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-115 420.6 287 71.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.4e-115 420.6 287 71.8
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.4e-115 419.9 294 71.4
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 5.3e-115 418.7 261 75.9
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 9.0e-115 417.9 419 55.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 9.0e-115 417.9 299 70.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.6e-114 414.8 415 54.7
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 7.6e-114 414.8 422 55.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.9e-113 412.9 266 72.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.8e-113 412.5 290 69.0
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 4.9e-113 412.1 254 76.8
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 6.4e-113 411.8 266 72.6
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 8.4e-113 411.4 417 54.0
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.1e-112 411.0 291 70.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.4e-112 410.6 294 70.1
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.9e-112 410.2 262 74.8
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 3.2e-112 409.5 415 54.5
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 7.1e-112 408.3 270 73.3
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.6e-111 407.1 261 74.7
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.1e-111 406.8 254 75.6
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.1e-111 406.8 257 74.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.5e-111 406.0 252 75.0
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.0e-110 402.9 418 53.3
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 5.1e-110 402.1 253 75.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 5.1e-110 402.1 254 74.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.5e-109 400.6 252 75.4
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.5e-109 399.8 414 55.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 3.3e-109 399.4 275 71.3
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 4.3e-109 399.1 256 72.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 5.6e-109 398.7 281 70.5
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 7.4e-109 398.3 259 71.8
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 9.6e-109 397.9 255 74.5
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-108 397.5 254 74.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.3e-108 397.5 254 74.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 6.2e-108 395.2 254 74.4
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 8.1e-108 394.8 256 73.8
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.8e-107 393.7 256 73.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.8e-107 393.7 239 78.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.2e-106 391.0 257 74.7
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.6e-106 389.8 278 68.3
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 7.6e-106 388.3 286 66.4
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.3e-105 387.5 256 69.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 8.4e-105 384.8 253 72.7
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.9e-104 383.6 274 69.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 4.2e-104 382.5 290 66.2
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.5e-104 382.1 278 66.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.5e-104 382.1 253 73.1
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 6.0e-103 378.6 265 69.1
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.3e-102 376.7 271 67.5
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 2.1e-100 370.2 264 66.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 5.3e-99 365.5 287 65.5
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.8e-97 359.4 174 97.1
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 3.8e-97 359.4 247 71.7
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 5.5e-96 355.5 257 67.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.0e-94 351.3 255 65.5
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 3.0e-94 349.7 214 75.7
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 6.7e-94 348.6 207 77.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.6e-92 344.0 254 65.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.4e-91 340.9 254 64.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 3.1e-91 339.7 254 63.8
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.1e-91 339.7 258 62.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 6.9e-91 338.6 308 58.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 9.0e-91 338.2 221 72.9
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 8.5e-89 331.6 304 56.2
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 7.2e-88 328.6 241 66.4
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 9.3e-88 328.2 275 57.8
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.7e-87 326.6 373 50.9
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 3.7e-84 316.2 259 57.5
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 4.1e-83 312.8 265 58.1
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 9.1e-83 311.6 261 59.8
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 3.4e-82 309.7 282 55.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 4.2e-80 302.8 274 54.4
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.7e-79 300.1 263 55.5
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 7.9e-79 298.5 277 53.1
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 7.9e-79 298.5 277 53.1
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 5.1e-78 295.8 277 52.7
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 6.7e-78 295.4 264 55.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 3.3e-77 293.1 259 54.8
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.8e-76 290.0 259 55.2
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 6.3e-76 288.9 259 54.4
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 3.4e-74 283.1 176 77.3
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.8e-68 262.7 167 74.3
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 6.3e-68 262.3 264 50.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.0e-66 257.3 176 68.8
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.0e-65 255.0 159 73.6
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.8e-62 244.2 219 54.3
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 7.5e-61 238.8 313 43.8
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.5e-58 229.9 153 73.2
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.9e-57 226.9 215 80.9
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.8e-57 226.5 150 74.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.1e-43 180.3 113 75.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.3e-41 174.9 136 64.7
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.5e-40 171.4 119 68.9
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.0e-37 161.0 253 38.3
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.8e-34 149.1 100 72.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 5.2e-30 136.3 100 65.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.5e-29 134.8 80 77.5
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.1e-19 99.4 56 71.4
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 8.1e-15 85.9 109 49.5
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.1e-14 84.0 48 77.1
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.2e-13 82.0 50 76.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.0e-13 81.3 48 75.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.6e-13 80.9 55 74.5
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.9e-12 76.6 69 53.6
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 7.8e-10 69.3 373 20.6


User provided reference genes

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