Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 5.6e-187 657.5 347 100.0
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 4.2e-182 641.3 347 97.7
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 1.2e-181 639.8 347 96.8
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 5.3e-137 491.5 363 74.9
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 3.3e-131 472.2 373 72.4
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 7.4e-131 471.1 373 71.8
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 4.4e-83 312.4 366 49.7
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 7.1e-81 305.1 352 49.4
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 1.6e-80 303.9 363 49.9
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 2.1e-80 303.5 360 48.9
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 3.5e-80 302.8 353 48.7
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.6e-80 302.4 359 47.4
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 1.0e-79 301.2 366 50.0
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 1.3e-79 300.8 359 47.4
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.3e-79 300.1 359 47.6
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 5.1e-79 298.9 330 51.8
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 1.1e-78 297.7 357 49.0
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 3.3e-78 296.2 363 47.1
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 1.6e-77 293.9 355 49.3
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.7e-77 292.4 362 47.8
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.1e-76 291.2 362 47.2
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 1.8e-76 290.4 319 52.0
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 2.0e-75 287.0 312 53.2
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 4.1e-73 279.3 353 46.7
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 4.6e-72 275.8 364 45.3
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 6.0e-72 275.4 331 49.8
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 7.8e-72 275.0 350 44.3
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 1.3e-71 274.2 352 46.9
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 2.3e-71 273.5 360 46.4
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 3.0e-71 273.1 359 46.8
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 5.1e-71 272.3 358 45.0
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 6.6e-71 271.9 324 46.9
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 8.6e-71 271.6 324 47.2
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 1.9e-70 270.4 324 46.6
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 7.3e-70 268.5 359 43.5
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 1.6e-69 267.3 355 46.5
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 3.6e-69 266.2 351 44.2
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 6.2e-69 265.4 374 43.3
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 1.1e-68 264.6 352 45.2
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 1.4e-68 264.2 359 42.6
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 3.1e-68 263.1 345 46.7
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 1.2e-67 261.2 361 42.9
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 1.2e-67 261.2 308 50.6
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 1.2e-67 261.2 355 43.1
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 3.4e-67 259.6 343 46.4
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 3.4e-67 259.6 361 42.9
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 7.6e-67 258.5 358 42.7
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 1.7e-66 257.3 359 42.1
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 3.8e-66 256.1 326 44.8
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 2.4e-65 253.4 303 47.9
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 6.0e-64 248.8 358 42.7
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 6.0e-64 248.8 342 44.2
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 1.6e-61 240.7 355 42.3
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 2.8e-61 240.0 321 45.5
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 6.9e-60 235.3 324 43.2
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 1.5e-59 234.2 344 40.7
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 2.6e-59 233.4 311 45.3
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 3.4e-59 233.0 340 42.6
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 1.3e-58 231.1 318 44.0
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 6.4e-58 228.8 356 39.3
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 1.4e-57 227.6 327 45.3
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 7.1e-57 225.3 323 44.6
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 9.3e-57 224.9 312 42.3
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 6.0e-56 222.2 262 51.5
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 6.0e-56 222.2 271 49.8
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 3.3e-54 216.5 345 39.7
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 1.3e-50 204.5 274 47.4
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 2.9e-50 203.4 360 38.3
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 3.8e-50 203.0 333 40.2
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 3.8e-50 203.0 333 40.2
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 9.3e-49 198.4 303 43.2
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 1.6e-48 197.6 343 40.8
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 4.6e-48 196.1 303 42.6
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 2.3e-47 193.7 257 46.7
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 2.3e-47 193.7 257 46.7
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 2.3e-47 193.7 274 46.4
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 4.3e-46 189.5 330 37.9
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 2.4e-44 183.7 347 36.3
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 9.0e-44 181.8 274 44.2
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 2.9e-42 176.8 245 45.3
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 6.0e-40 169.1 337 37.1
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 7.9e-40 168.7 270 40.0
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.3e-39 167.2 337 36.8
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 3.0e-39 166.8 216 48.6
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 5.7e-38 162.5 295 39.3
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 1.6e-37 161.0 230 47.4
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 2.2e-34 150.6 331 33.5
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 2.2e-34 150.6 345 32.2
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 1.2e-32 144.8 349 32.1
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 2.1e-32 144.1 349 32.7
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 3.5e-32 143.3 195 45.1
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 4.6e-32 142.9 333 32.7
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 2.3e-31 140.6 336 32.7
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 2.3e-31 140.6 336 32.7
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 2.3e-31 140.6 336 32.7
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 2.5e-30 137.1 331 32.6
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 7.4e-30 135.6 342 31.0
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 7.4e-30 135.6 141 48.2
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 1.6e-29 134.4 342 31.0
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 2.8e-29 133.7 293 34.1
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 6.3e-29 132.5 362 29.8
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 9.0e-28 128.6 104 59.6
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 3.6e-24 116.7 263 31.9
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 7.9e-24 115.5 321 28.3
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 1.0e-23 115.2 291 32.0
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 3.3e-22 110.2 274 32.1
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 6.3e-21 105.9 234 35.0
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 2.4e-20 104.0 294 31.0
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 6.9e-20 102.4 250 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.0e-18 98.6 300 27.7
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 6.5e-18 95.9 264 28.8
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.2e-16 91.7 112 41.1
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.2e-16 91.7 112 41.1
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 6.3e-13 79.3 80 43.8
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 1.1e-09 68.6 81 46.9


User provided reference genes

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