Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 8.9e-50 199.9 97 100.0
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 3.4e-49 198.0 96 100.0
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 1.3e-48 196.1 97 96.9
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 5.1e-45 184.1 96 90.6
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 2.6e-41 171.8 95 85.3
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.7e-40 169.1 94 85.1
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 4.9e-40 167.5 96 82.3
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 3.3e-36 154.8 92 77.2
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 3.3e-36 154.8 94 74.5
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.6e-35 152.5 94 76.6
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 2.1e-35 152.1 93 73.1
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 2.1e-35 152.1 93 73.1
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 2.8e-35 151.8 93 76.3
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 6.2e-35 150.6 93 72.0
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 4.0e-34 147.9 94 71.3
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 4.0e-34 147.9 94 71.3
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 4.0e-34 147.9 94 71.3
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 4.0e-34 147.9 92 72.8
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 6.9e-34 147.1 92 72.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 6.9e-34 147.1 94 71.3
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 6.9e-34 147.1 94 72.3
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 9.0e-34 146.7 92 71.7
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 9.0e-34 146.7 92 72.8
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 9.0e-34 146.7 94 71.3
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 9.0e-34 146.7 97 68.0
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 9.0e-34 146.7 94 69.1
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 3.4e-33 144.8 94 69.1
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 4.5e-33 144.4 97 67.0
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 4.5e-33 144.4 90 73.3
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 7.6e-33 143.7 94 71.3
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 7.6e-33 143.7 92 69.6
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 7.6e-33 143.7 110 63.6
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 9.9e-33 143.3 93 69.9
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.3e-32 142.9 96 69.8
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 1.3e-32 142.9 94 70.2
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.7e-32 142.5 90 72.2
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.7e-32 142.5 93 68.8
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.8e-32 141.4 92 67.4
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 6.4e-32 140.6 93 68.8
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 1.9e-31 139.0 94 68.1
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 4.2e-31 137.9 92 67.4
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 4.2e-31 137.9 92 67.4
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 7.1e-31 137.1 94 64.9
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 7.1e-31 137.1 94 62.8
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 9.3e-31 136.7 94 69.1
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 9.3e-31 136.7 94 64.9
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 9.3e-31 136.7 94 66.0
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.6e-30 136.0 94 63.8
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 2.1e-30 135.6 94 67.0
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.1e-30 135.6 92 65.2
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 2.7e-30 135.2 94 62.8
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 4.6e-30 134.4 95 64.2
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 4.6e-30 134.4 94 64.9
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 7.9e-30 133.7 94 63.8
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 1.8e-29 132.5 94 61.7
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 1.8e-29 132.5 94 61.7
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.0e-29 131.7 94 63.8
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 3.9e-29 131.3 83 71.1
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 3.9e-29 131.3 94 62.8
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 6.7e-29 130.6 94 63.8
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.1e-28 129.8 92 60.9
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 1.5e-28 129.4 94 62.8
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 1.5e-28 129.4 95 58.9
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.9e-28 129.0 94 59.6
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 2.5e-28 128.6 92 63.0
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 7.4e-28 127.1 85 71.8
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 7.4e-28 127.1 99 62.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 1.6e-27 125.9 95 60.0
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 1.6e-27 125.9 95 60.0
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.1e-27 125.6 94 60.6
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 2.8e-27 125.2 93 59.1
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 6.2e-27 124.0 92 58.7
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 6.2e-27 124.0 92 58.7
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 8.1e-27 123.6 92 60.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 1.1e-26 123.2 92 57.6
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.1e-26 123.2 90 63.3
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 1.4e-26 122.9 92 58.7
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.4e-26 122.9 94 57.4
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.8e-26 122.5 93 62.4
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 1.8e-26 122.5 92 57.6
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 2.4e-26 122.1 92 56.5
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 3.1e-26 121.7 92 56.5
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 3.1e-26 121.7 90 63.3
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 4.0e-26 121.3 92 57.6
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 4.0e-26 121.3 92 57.6
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 6.9e-26 120.6 94 57.4
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 9.0e-26 120.2 92 56.5
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 2.0e-25 119.0 92 56.5
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 2.0e-25 119.0 95 58.9
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 2.6e-25 118.6 94 56.4
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 2.6e-25 118.6 90 61.1
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 2.6e-25 118.6 90 61.1
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 1.7e-24 115.9 92 57.6
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 2.2e-24 115.5 84 63.1
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 1.9e-23 112.5 94 55.3
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.9e-22 107.1 66 75.8
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.0e-21 106.7 67 74.6
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 1.8e-21 105.9 92 50.0
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 9.6e-20 100.1 64 70.3
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.1e-19 99.0 68 60.3
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 3.4e-17 91.7 70 60.0
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 2.1e-14 82.4 63 60.3
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 2.1e-14 82.4 52 73.1
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 1.3e-13 79.7 62 53.2
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 7.4e-12 73.9 64 57.8
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 4.1e-10 68.2 94 40.4
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 5.9e-09 64.3 84 33.3
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.5e-07 58.9 38 68.4
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 4.6e-06 54.7 97 30.9


User provided reference genes

Program Settings