Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.8e-263 912.1 486 100.0
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.0e-258 896.3 486 98.4
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.1e-248 862.1 486 94.7
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.1e-201 706.8 493 79.9
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.9e-198 693.7 494 78.5
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 6.9e-175 617.8 495 70.3
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 5.1e-162 575.1 493 70.8
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.5e-132 477.2 504 55.4
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 4.4e-129 465.7 502 55.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 2.7e-126 456.4 513 52.4
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 1.6e-123 447.2 514 52.3
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 4.8e-120 435.6 504 52.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 6.3e-120 435.3 489 52.6
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.4e-119 434.1 494 50.4
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.8e-119 433.7 537 49.3
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.1e-119 433.0 490 52.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.7e-118 429.9 491 52.1
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 3.5e-118 429.5 488 51.6
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 3.8e-117 426.0 492 51.2
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 1.1e-116 424.5 505 51.5
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 4.2e-116 422.5 489 48.5
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 5.5e-116 422.2 492 51.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.8e-115 419.9 488 48.2
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.0e-113 413.7 524 47.3
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 3.4e-113 412.9 508 50.8
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 4.4e-113 412.5 510 49.4
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 9.8e-113 411.4 501 52.1
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.7e-112 410.6 531 51.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.7e-112 410.6 531 51.0
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 4.1e-111 406.0 518 49.4
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.6e-110 404.1 503 50.1
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.0e-109 401.4 498 49.4
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.0e-109 401.4 517 48.9
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.3e-109 401.0 502 50.4
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.9e-109 399.8 491 48.7
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-108 397.5 491 49.1
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.5e-108 397.5 493 46.9
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 5.6e-108 395.6 508 47.6
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.6e-107 394.0 492 48.2
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.6e-107 394.0 489 47.4
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.1e-107 393.7 490 47.6
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.6e-107 392.9 494 48.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 3.6e-107 392.9 539 46.0
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.0e-106 391.3 491 47.5
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.0e-106 391.3 494 45.7
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.8e-106 390.6 491 47.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.0e-106 389.8 494 48.2
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.5e-105 387.5 499 47.1
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.0e-105 387.1 499 47.1
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.6e-105 386.7 493 46.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.3e-104 384.4 494 48.0
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-104 383.6 517 45.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 6.4e-104 382.1 488 47.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.4e-104 382.1 489 47.4
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 1.4e-103 380.9 488 45.7
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.1e-103 379.4 474 48.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 1.2e-102 377.9 488 46.9
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 1.2e-102 377.9 488 46.9
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.7e-102 376.7 514 45.9
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 7.8e-102 375.2 484 47.5
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.0e-101 374.8 349 59.3
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 3.0e-101 373.2 532 45.1
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 3.9e-101 372.9 497 46.7
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.1e-100 371.3 487 45.6
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 1.5e-100 370.9 497 45.5
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.5e-100 370.9 508 46.9
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.5e-100 370.9 508 46.9
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.3e-100 369.8 488 46.5
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 3.3e-100 369.8 506 47.6
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 7.3e-100 368.6 488 46.1
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 3.6e-99 366.3 494 46.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.1e-98 364.8 522 44.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.4e-98 364.4 512 45.1
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.3e-98 363.6 508 45.1
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.2e-98 362.5 507 47.3
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 6.8e-98 362.1 499 45.9
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 3.4e-97 359.8 491 45.0
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 5.8e-97 359.0 520 43.7
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.5e-97 358.6 489 45.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.3e-96 357.8 489 45.4
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 2.2e-96 357.1 495 46.9
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 6.4e-96 355.5 490 44.1
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.9e-95 354.0 494 46.4
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.2e-95 353.2 496 46.0
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 5.4e-95 352.4 513 47.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.7e-93 347.4 425 49.4
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.7e-93 347.4 425 49.4
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 3.9e-93 346.3 496 45.6
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.9e-93 346.3 496 45.6
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 3.9e-93 346.3 509 41.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-92 344.7 496 45.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.9e-92 344.0 422 47.6
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 1.1e-90 338.2 436 48.4
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 2.3e-90 337.0 465 46.0
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.1e-87 328.2 508 43.7
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 3.0e-85 320.1 562 40.0
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 5.6e-84 315.8 494 44.5
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.2e-83 312.4 489 42.3
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.8e-82 310.8 489 40.7
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.8e-82 310.8 382 47.9
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.0e-81 307.4 499 42.9
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 3.2e-79 300.1 490 42.0
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 1.2e-78 298.1 495 41.4
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.2e-78 298.1 488 41.0
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 1.1e-76 291.6 486 40.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.3e-76 289.7 493 40.6
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.6e-73 280.4 349 50.7
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 2.6e-73 280.4 429 40.8
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 7.6e-73 278.9 471 41.8
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.2e-71 273.5 487 38.6
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 3.6e-67 260.0 499 38.1
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.0e-65 254.2 464 39.0
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 6.0e-62 242.7 504 35.1
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.3e-61 240.7 491 37.1
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 2.3e-61 240.7 505 34.9
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 5.6e-60 236.1 427 41.0
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 5.6e-60 236.1 369 41.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 9.9e-57 225.3 428 37.1
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.2e-56 224.2 385 38.7
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.1e-55 221.9 459 36.6
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.1e-54 217.6 487 35.1
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.0e-50 203.4 738 27.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.0e-45 187.2 218 47.7
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.6e-41 174.1 215 46.5
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 5.0e-40 169.9 670 28.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 8.5e-40 169.1 211 44.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 8.8e-37 159.1 364 31.6
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.1e-36 158.7 347 35.7
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 3.3e-36 157.1 415 29.9
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.7e-36 155.6 217 46.1
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 3.7e-27 127.1 600 23.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 5.9e-25 119.8 590 23.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.0e-24 119.0 213 39.0
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 9.4e-23 112.5 142 43.0
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.6e-22 111.7 220 35.9
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.4e-21 108.6 219 31.5
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.9e-21 107.1 523 26.4
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 1.3e-19 102.1 210 34.3
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 3.7e-19 100.5 120 48.3
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 6.3e-19 99.8 210 34.8
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 8.2e-19 99.4 224 34.4
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.2e-17 95.5 187 35.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 2.0e-17 94.7 117 43.6
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 2.6e-17 94.4 121 47.9
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.5e-17 94.0 452 23.2
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 7.7e-17 92.8 167 37.7
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.0e-16 92.4 114 49.1
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.9e-16 90.9 73 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.8e-16 90.5 213 31.5
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.2e-15 87.4 209 31.6
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 7.2e-15 86.3 74 51.4
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 8.8e-13 79.3 213 28.6
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 5.3e-10 70.1 302 22.8
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 2.2e-08 64.7 181 32.0
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.5e-07 62.0 70 44.3
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 2.5e-07 61.2 129 31.0
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 2.1e-06 58.2 127 32.3
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.6e-06 57.4 59 55.9
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 3.6e-06 57.4 127 31.5
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.6e-06 57.4 297 25.6
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.6e-06 57.4 120 33.3
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 3.6e-06 57.4 120 33.3
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 3.6e-06 57.4 119 30.3
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 6.1e-06 56.6 120 33.3
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 6.1e-06 56.6 146 28.8
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 8.0e-06 56.2 162 29.0


User provided reference genes

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