Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 8.6e-141 505.0 565 100.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 7.0e-135 485.3 565 89.4
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 9.5e-116 421.8 627 65.1
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 6.1e-70 269.6 164 87.2
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.2e-67 259.2 189 76.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.2e-63 247.3 755 38.8
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-60 238.4 174 75.9
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 4.7e-54 216.9 158 75.9
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.4e-53 215.3 173 69.4
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.4e-53 215.3 611 54.3
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 8.2e-51 206.1 173 67.1
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.1e-50 203.8 180 64.4
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 5.0e-48 196.8 173 61.3
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 4.2e-47 193.7 170 65.9
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.6e-46 191.8 177 62.7
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 2.7e-46 191.0 180 61.7
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 4.7e-46 190.3 164 63.4
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.0e-45 189.1 140 72.9
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.0e-45 189.1 186 59.7
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.8e-45 188.3 171 63.7
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.8e-45 188.3 176 62.5
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.8e-45 188.3 176 62.5
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.8e-45 188.3 167 67.7
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 2.3e-45 188.0 159 66.7
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.0e-45 187.2 151 69.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.0e-45 187.2 151 69.5
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.0e-45 187.2 146 72.6
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 5.2e-45 186.8 158 66.5
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 5.2e-45 186.8 140 71.4
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 8.8e-45 186.0 154 66.2
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.1e-44 185.7 151 68.9
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.1e-44 185.7 151 68.9
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.1e-44 185.7 146 72.6
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.1e-44 185.7 186 57.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.5e-44 185.3 151 68.9
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.5e-44 185.3 141 70.9
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.5e-44 185.3 141 70.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.0e-44 184.9 154 68.8
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.0e-44 184.9 146 71.9
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.6e-44 184.5 175 61.1
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.4e-44 183.7 173 64.7
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 5.7e-44 183.3 144 68.8
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 9.7e-44 182.6 178 62.4
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 9.7e-44 182.6 181 57.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.2e-43 181.4 177 57.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.2e-43 181.4 169 64.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 2.8e-43 181.0 147 68.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.7e-43 180.6 112 83.0
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.7e-43 180.6 150 66.7
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 4.8e-43 180.3 171 57.9
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 4.8e-43 180.3 170 61.8
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 8.2e-43 179.5 181 56.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 8.2e-43 179.5 146 67.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.1e-42 179.1 179 58.1
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.1e-42 179.1 185 60.5
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.3e-42 176.8 179 57.0
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 9.1e-42 176.0 140 66.4
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 9.1e-42 176.0 149 63.1
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 9.1e-42 176.0 169 58.0
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.7e-41 174.5 150 64.7
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.7e-41 174.5 150 61.3
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 3.5e-41 174.1 154 59.7
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.0e-40 172.6 168 60.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.9e-40 171.0 149 63.1
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.8e-40 170.6 169 56.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 3.8e-40 170.6 151 62.9
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.5e-40 169.9 139 64.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 6.5e-40 169.9 158 62.0
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 8.5e-40 169.5 172 57.6
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 8.5e-40 169.5 172 57.6
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 8.5e-40 169.5 172 57.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 8.5e-40 169.5 149 63.1
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.1e-39 169.1 167 57.5
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.5e-39 167.9 148 60.1
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 3.2e-39 167.5 149 60.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 3.2e-39 167.5 140 63.6
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.5e-39 166.8 185 53.0
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.2e-38 165.6 146 62.3
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.6e-38 165.2 181 56.9
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.1e-38 164.9 173 54.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.6e-38 164.1 177 55.9
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.6e-38 164.1 145 62.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.0e-38 162.9 177 54.8
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.0e-37 162.5 149 61.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-37 162.5 177 54.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.0e-37 162.5 126 66.7
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.4e-37 162.2 105 76.2
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-37 161.8 149 61.1
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.0e-37 161.0 143 64.3
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 3.0e-37 161.0 155 56.1
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 3.0e-37 161.0 110 76.4
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 4.0e-37 160.6 113 72.6
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.0e-37 160.6 186 55.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 5.2e-37 160.2 152 61.2
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 5.2e-37 160.2 105 74.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.5e-36 158.7 182 54.4
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.0e-36 158.3 151 60.9
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 3.4e-36 157.5 146 62.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.4e-36 157.5 105 76.2
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.4e-36 157.5 105 76.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.5e-36 156.4 151 60.3
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.3e-35 155.6 164 56.7
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.7e-35 155.2 135 63.7
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.7e-35 155.2 143 61.5
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 6.3e-35 153.3 112 72.3
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.4e-34 151.4 103 76.7
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.1e-34 150.6 138 59.4
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.9e-33 146.7 178 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.3e-32 145.6 167 50.3
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 5.5e-31 140.2 154 54.5
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.8e-29 135.2 171 46.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 1.8e-29 135.2 108 69.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.3e-29 134.8 91 71.4
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.3e-27 129.0 109 66.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.7e-27 128.6 145 54.5
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.7e-27 128.6 145 54.5
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.8e-27 127.9 92 71.7
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.4e-26 124.8 159 47.8
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 3.1e-26 124.4 137 54.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 3.1e-26 124.4 132 56.8
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 4.1e-26 124.0 101 60.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-25 122.1 110 58.2
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-25 121.7 131 57.3
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 3.5e-25 120.9 81 75.3
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.7e-25 119.8 105 61.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.7e-24 118.6 122 60.7
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.6e-24 116.7 105 61.0
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.1e-23 115.9 185 43.2
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 4.3e-23 114.0 102 56.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 7.3e-23 113.2 128 55.5
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.5e-23 112.8 110 58.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.6e-22 110.9 110 57.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.6e-20 104.8 108 53.7
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.6e-20 104.8 107 52.3
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 7.5e-20 103.2 108 52.8
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 7.5e-20 103.2 104 52.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.3e-19 102.4 101 55.4
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.9e-19 101.3 104 55.8
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 3.7e-19 100.9 108 51.9
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 3.7e-19 100.9 107 52.3
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.4e-19 100.1 98 55.1
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.2e-18 97.8 127 47.2
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 3.2e-18 97.8 105 50.5
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.0e-18 96.7 101 54.5
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.6e-17 95.5 147 40.8
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.0e-17 95.1 106 52.8
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.3e-16 91.7 120 47.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.5e-15 89.0 109 45.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.2e-14 85.9 102 44.1
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 3.6e-14 84.3 67 61.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.8e-13 82.0 94 45.7
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 3.1e-13 81.3 50 82.0
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.0e-13 80.9 107 43.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.8e-13 80.1 127 44.1
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-12 79.3 52 75.0
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-11 75.9 53 71.7
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.4e-11 73.6 88 51.1
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 8.3e-11 73.2 76 56.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 8.3e-11 73.2 168 29.8
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 4.1e-10 70.9 169 36.7
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 3.5e-09 67.8 64 51.6
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 1.0e-08 66.2 72 52.8
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 4.3e-07 60.8 52 51.9
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.2e-06 59.3 62 54.8
SGA_v2.0_scaffold157G37396 Striga asiatica HOM05D002086 ORTHO05D004968 6.2e-06 57.0 58 48.3


User provided reference genes

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