Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 7.4e-74 280.4 138 100.0
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.6e-68 261.2 130 96.9
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.0e-67 260.0 130 97.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.3e-65 250.8 130 95.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.5e-63 244.6 130 90.0
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 5.9e-63 244.2 130 91.5
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.9e-61 239.2 130 88.5
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.5e-61 238.8 130 86.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 9.4e-61 236.9 130 87.7
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.1e-58 229.9 130 86.2
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.6e-58 228.8 130 85.4
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 7.0e-56 220.7 130 82.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.6e-47 193.0 130 68.5
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 5.0e-46 188.0 130 72.3
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 5.0e-46 188.0 130 69.2
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 8.5e-46 187.2 159 59.7
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 2.5e-45 185.7 130 66.9
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 4.2e-45 184.9 130 68.5
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 2.1e-44 182.6 130 66.2
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 3.6e-44 181.8 131 68.7
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.6e-44 181.8 131 66.4
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 2.3e-43 179.1 130 64.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.3e-43 179.1 144 61.8
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 5.2e-43 177.9 130 66.2
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 1.5e-42 176.4 135 64.4
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.6e-42 175.6 130 63.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 2.6e-42 175.6 170 52.4
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 5.7e-42 174.5 130 64.6
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 9.8e-42 173.7 130 60.0
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.7e-41 172.9 134 61.2
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 2.2e-41 172.6 132 62.1
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.8e-41 172.2 130 61.5
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.8e-41 172.2 132 61.4
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 3.7e-41 171.8 130 60.8
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.4e-40 169.9 131 62.6
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.8e-40 169.5 173 52.0
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.1e-40 168.3 153 53.6
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.1e-40 168.3 130 60.8
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.1e-40 168.3 130 59.2
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.4e-40 167.9 130 61.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 5.4e-40 167.9 151 57.6
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 7.0e-40 167.5 130 58.5
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 7.0e-40 167.5 130 58.5
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 7.0e-40 167.5 131 58.8
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 9.1e-40 167.2 130 62.3
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.2e-39 166.8 130 63.8
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.6e-39 166.4 130 60.8
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.0e-39 166.0 131 66.4
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.0e-39 166.0 130 62.3
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 3.5e-39 165.2 134 59.0
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 3.5e-39 165.2 131 58.8
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 3.5e-39 165.2 131 63.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 4.5e-39 164.9 135 60.7
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.5e-39 164.9 130 58.5
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 5.9e-39 164.5 130 59.2
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.2e-38 162.5 130 62.3
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 3.8e-38 161.8 130 59.2
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 8.5e-38 160.6 132 57.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.1e-37 160.2 130 58.5
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.9e-37 159.5 126 58.7
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.9e-37 159.5 130 58.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.9e-37 159.5 126 58.7
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.9e-37 159.5 130 62.3
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.2e-37 158.3 133 57.9
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.2e-37 158.3 133 57.9
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.2e-37 158.3 139 59.0
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 9.4e-37 157.1 130 53.8
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 9.4e-37 157.1 127 61.4
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 9.4e-37 157.1 133 57.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.4e-37 157.1 133 57.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.4e-37 157.1 133 57.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 9.4e-37 157.1 169 50.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.2e-36 156.8 129 61.2
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.2e-36 156.8 125 59.2
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.2e-36 156.8 125 59.2
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.6e-36 156.4 125 59.2
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.6e-36 156.4 130 59.2
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.7e-36 155.6 133 57.9
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 3.6e-36 155.2 133 57.1
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 6.1e-36 154.5 131 54.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 6.1e-36 154.5 126 60.3
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.4e-35 153.3 126 59.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.4e-35 153.3 126 56.3
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 3.0e-35 152.1 130 54.6
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 4.0e-35 151.8 126 57.1
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-34 150.2 172 46.5
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.5e-34 149.8 106 62.3
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.0e-34 149.4 127 55.1
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.6e-34 149.1 126 56.3
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.6e-34 149.1 130 54.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 5.7e-34 147.9 128 56.2
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 7.5e-34 147.5 130 55.4
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 1.7e-33 146.4 90 72.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 8.3e-33 144.1 94 68.1
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.1e-32 143.7 152 48.0
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 1.4e-32 143.3 139 51.1
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 4.1e-32 141.7 134 55.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.1e-32 140.6 106 62.3
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.5e-31 138.7 88 69.3
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 5.9e-31 137.9 136 53.7
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 2.3e-30 136.0 91 62.6
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 2.3e-30 136.0 136 50.0
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.9e-30 135.6 133 48.9
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 8.6e-30 134.0 128 52.3
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-29 133.3 80 71.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-29 133.3 80 71.2
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.5e-29 133.3 136 51.5
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 2.5e-29 132.5 90 64.4
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.2e-29 131.0 101 60.4
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.4e-26 121.7 73 72.6
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 9.8e-26 120.6 131 47.3
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.9e-25 119.0 75 70.7
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 7.0e-24 114.4 130 44.6
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 4.6e-23 111.7 73 63.0
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 3.9e-22 108.6 93 55.9
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 4.3e-21 105.1 53 90.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.2e-20 103.6 88 54.5
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.1e-20 102.8 83 60.2
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.6e-20 102.1 116 49.1
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.1e-20 101.3 81 60.5
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.4e-19 100.1 121 45.5
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.8e-19 99.8 98 49.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 3.1e-19 99.0 99 51.5
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.0e-18 96.3 96 47.9
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.3e-17 93.6 90 53.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.9e-17 92.4 95 49.5
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 4.9e-17 91.7 117 37.6
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 4.1e-16 88.6 74 54.1
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 9.2e-16 87.4 82 53.7
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-15 84.3 49 75.5
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-15 84.3 49 75.5
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.0e-14 84.0 82 50.0
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.3e-14 82.8 49 73.5
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.6e-14 81.3 49 73.5
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.1e-13 80.5 50 68.0
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 5.6e-13 78.2 49 69.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 9.5e-13 77.4 160 31.9
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.2e-10 70.5 94 41.5
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 2.6e-10 69.3 85 38.8
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 4.4e-10 68.6 41 73.2
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.3e-09 67.0 47 61.7
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 8.3e-09 64.3 48 60.4


User provided reference genes

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