Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 3.4e-242 841.3 431 100.0
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 2.2e-241 838.6 431 97.7
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 2.4e-240 835.1 431 96.8
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 5.1e-230 800.8 429 93.0
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 3.3e-229 798.1 431 94.7
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.9e-225 785.0 431 94.0
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 5.8e-210 734.2 431 89.3
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 6.5e-201 704.1 437 84.2
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 2.5e-200 702.2 436 80.7
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 2.1e-199 699.1 431 84.5
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 3.6e-199 698.4 436 80.5
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 3.0e-198 695.3 451 78.9
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 5.1e-198 694.5 433 81.5
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 1.5e-197 693.0 436 81.7
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 2.5e-197 692.2 435 82.3
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 9.7e-197 690.3 431 81.4
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.3e-196 689.9 437 81.2
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 2.2e-196 689.1 436 82.1
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 6.9e-195 684.1 436 79.1
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 2.0e-194 682.6 419 82.8
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 5.9e-194 681.0 389 87.1
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.3e-193 679.9 414 83.1
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.7e-193 679.5 421 82.7
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 2.2e-193 679.1 436 83.3
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.9e-193 678.7 437 79.6
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 2.9e-193 678.7 437 81.0
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 3.8e-193 678.3 428 82.9
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 5.0e-193 677.9 437 78.9
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 5.0e-193 677.9 436 81.2
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 5.0e-193 677.9 437 81.7
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 5.0e-193 677.9 372 91.9
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 6.5e-193 677.6 423 83.9
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 6.5e-193 677.6 435 80.5
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 6.5e-193 677.6 436 81.2
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 1.1e-192 676.8 430 82.3
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.2e-192 675.2 393 88.0
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 7.2e-192 674.1 462 78.6
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.2e-191 673.3 436 80.3
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.6e-191 672.9 428 80.4
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 7.9e-191 670.6 429 79.3
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.8e-190 669.5 436 81.2
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 8.8e-190 667.2 434 79.7
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.5e-189 666.4 436 80.5
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 1.5e-189 666.4 436 80.5
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 1.5e-189 666.4 436 79.4
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 1.5e-189 666.4 441 79.1
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 2.0e-189 666.0 434 79.5
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.4e-189 664.8 415 83.6
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 5.7e-189 664.5 430 81.2
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 7.4e-189 664.1 435 78.4
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 1.7e-188 662.9 435 78.2
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 6.3e-188 661.0 435 77.9
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 6.3e-188 661.0 437 78.9
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 6.3e-188 661.0 436 79.8
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 6.3e-188 661.0 443 79.0
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 1.8e-187 659.4 439 80.0
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 2.4e-187 659.1 436 79.6
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 3.1e-187 658.7 439 79.7
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 3.1e-187 658.7 365 91.0
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 9.1e-187 657.1 439 79.3
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.5e-186 656.4 436 79.6
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 4.5e-186 654.8 437 80.1
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 5.9e-186 654.4 413 82.1
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 7.7e-186 654.1 435 78.9
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.0e-185 653.7 391 85.2
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 2.2e-185 652.5 466 76.8
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 3.8e-185 651.7 441 78.7
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 6.5e-185 651.0 436 77.8
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 1.4e-184 649.8 436 78.0
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 9.4e-184 647.1 458 74.0
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.4e-184 647.1 371 84.9
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 9.4e-184 647.1 414 82.4
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.0e-182 643.7 392 84.9
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 1.8e-182 642.9 460 75.0
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 3.9e-182 641.7 370 88.9
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 5.2e-182 641.3 380 86.8
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 8.8e-182 640.6 406 81.3
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 2.6e-181 639.0 412 80.8
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 3.3e-181 638.6 401 84.0
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 5.7e-181 637.9 432 77.5
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 6.3e-180 634.4 365 88.2
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 6.3e-180 634.4 431 78.2
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.4e-179 633.3 402 82.8
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 4.1e-179 631.7 365 88.5
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 7.0e-179 630.9 432 77.8
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 5.9e-178 627.9 336 91.4
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 1.3e-177 626.7 365 87.4
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 1.7e-177 626.3 364 87.4
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 5.5e-176 621.3 364 87.1
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 7.2e-176 620.9 430 75.1
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.6e-175 619.8 329 92.1
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.0e-174 617.1 424 77.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 4.0e-174 615.1 424 77.4
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.0e-173 612.8 439 74.9
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.0e-173 612.8 424 76.9
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.3e-172 610.1 387 79.8
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 8.3e-172 607.4 422 76.5
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 8.3e-172 607.4 422 76.5
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 9.1e-171 604.0 387 78.8
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 1.7e-169 599.7 364 80.8
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 3.2e-168 595.5 395 76.2
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 4.2e-168 595.1 370 79.5
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 6.1e-167 591.3 395 79.0
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 8.0e-167 590.9 395 79.0
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 1.8e-166 589.7 361 78.1
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 6.8e-166 587.8 390 79.7
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.4e-163 579.3 398 73.4
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 2.4e-163 579.3 363 77.4
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 5.4e-163 578.2 386 74.9
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.5e-162 575.5 363 76.9
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.7e-161 573.2 363 76.3
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 3.8e-161 572.0 314 87.9
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 3.1e-155 552.4 438 69.4
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 3.4e-149 532.3 303 84.8
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.7e-148 530.0 371 76.0
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 9.2e-147 524.2 283 90.8
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 2.7e-146 522.7 384 69.8
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.4e-139 500.4 351 71.5
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.9e-139 500.0 357 74.5
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 1.7e-137 493.4 351 70.9
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.1e-136 490.7 352 70.2
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 2.8e-135 486.1 352 70.7
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.3e-134 483.0 329 72.9
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.1e-134 482.6 353 69.1
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 3.1e-134 482.6 329 72.3
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 4.9e-132 475.3 403 61.8
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 6.4e-132 474.9 327 72.2
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 6.4e-132 474.9 327 72.2
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.9e-131 473.4 268 86.9
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.2e-130 470.7 329 71.4
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 7.8e-130 468.0 329 70.8
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 4.7e-127 458.8 446 60.1
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.6e-122 443.7 326 72.4
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 3.9e-121 439.1 344 61.6
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 4.3e-120 435.6 327 73.1
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.8e-119 433.0 368 58.7
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.6e-117 426.4 356 66.0
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 2.9e-116 422.9 312 67.0
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.0e-114 415.2 282 72.3
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 1.1e-107 394.4 224 88.4
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 4.6e-90 335.9 228 77.2
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 3.8e-76 289.7 234 66.2
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 4.4e-72 276.2 193 72.5
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 6.5e-68 262.3 201 64.7
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 4.1e-62 243.0 185 65.9
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.2e-61 241.5 276 48.9
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.5e-61 240.0 257 53.3
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 3.2e-59 233.4 185 63.8
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 7.0e-54 215.7 153 68.6
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 5.0e-52 209.5 181 59.1
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 4.7e-50 203.0 309 39.2
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.4e-49 201.4 175 58.9
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 8.3e-47 192.2 148 69.6
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 7.0e-46 189.1 179 62.0
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 5.9e-45 186.0 101 86.1
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-44 184.9 181 55.8
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.1e-43 181.8 100 89.0
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 2.5e-43 180.6 104 85.6
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 5.5e-43 179.5 101 83.2
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.1e-38 165.2 100 79.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.0e-37 161.0 77 94.8
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 1.5e-35 154.8 122 68.0
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 2.5e-35 154.1 212 40.1
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.2e-34 151.8 135 62.2
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 4.0e-33 146.7 76 88.2
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 9.5e-27 125.6 72 87.5
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.7e-23 114.8 74 77.0
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 8.3e-23 112.5 189 40.2
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 3.9e-20 103.6 106 54.7
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 6.4e-15 86.3 77 63.6
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 6.4e-15 86.3 77 63.6
Aa31sc107G60 Aethionema arabicum HOM05D003910 ORTHO05D059684 4.6e-13 80.1 49 79.6
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 1.9e-11 74.7 53 64.2
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 6.2e-10 69.7 98 50.0
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 3.1e-09 67.4 36 88.9
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 6.8e-09 66.2 59 61.0
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 8.9e-09 65.9 55 58.2
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 9.9e-08 62.4 68 48.5


User provided reference genes

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