Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 3.5e-191 671.8 421 100.0
PGSC0003DMG400029579 Solanum tuberosum HOM05D009522 ORTHO05D009846 4.4e-170 601.7 423 91.5
Solyc08g069020.1 Solanum lycopersicum HOM05D009522 ORTHO05D009846 2.0e-162 576.2 421 88.8
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 6.2e-140 501.5 430 73.3
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 1.6e-98 364.0 435 62.8
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.8e-84 316.6 443 57.3
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 7.0e-75 285.4 428 54.2
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 1.7e-41 174.5 489 39.9
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 3.8e-36 156.8 487 37.0
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 5.4e-35 152.9 490 36.3
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 1.6e-34 151.4 499 37.3
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.1e-34 151.0 493 36.7
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 2.8e-31 140.6 489 36.8
Nitab4.5_0004131g0040 Nicotiana tabacum HOM05D017514 ORTHO05D009846 4.9e-28 129.8 353 38.2
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 6.4e-28 129.4 517 33.7
Nitab4.5_0000555g0230 Nicotiana tabacum HOM05D017514 ORTHO05D009846 3.5e-26 123.6 354 39.5
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 2.1e-18 97.8 438 33.6
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 4.0e-14 83.6 449 30.3
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 3.8e-12 77.0 443 31.2
CAN.G426.21 Capsicum annuum HOM05D002375 ORTHO05D002457 2.1e-10 71.2 53 77.4
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 1.0e-09 68.9 432 28.0
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 1.3e-09 68.6 442 33.5
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 3.0e-09 67.4 426 29.6
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 5.1e-09 66.6 45 77.8
MSTRG.11810 Avicennia marina HOM05D009522 ORTHO05D009846 5.7e-08 63.2 42 78.6
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 9.7e-08 62.4 50 68.0
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 2.2e-07 61.2 50 66.0
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 2.8e-07 60.8 50 64.0
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.8e-07 60.8 50 66.0
SGA_v2.0_scaffold121G33031 Striga asiatica HOM05D009522 ORTHO05D009846 2.8e-07 60.8 41 75.6
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 68.0
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 68.0
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 64.0
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 64.0
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 66.0
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 3.7e-07 60.5 468 28.0
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 3.7e-07 60.5 50 66.0
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 4.8e-07 60.1 59 57.6
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 4.8e-07 60.1 50 64.0
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 4.8e-07 60.1 50 64.0
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 6.3e-07 59.7 64 53.1
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 6.3e-07 59.7 50 64.0
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 6.3e-07 59.7 62 56.5
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 6.3e-07 59.7 50 64.0
Ah.10g031940 Amaranthus hybridus HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 62.0
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 64.0
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 64.0
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 8.2e-07 59.3 85 44.7
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 8.2e-07 59.3 67 55.2
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 8.2e-07 59.3 67 55.2
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 8.2e-07 59.3 50 64.0
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 8.2e-07 59.3 468 28.0
EL10Ac2g03069 Beta vulgaris HOM05D003021 ORTHO05D002235 1.1e-06 58.9 70 50.0
CAN.G673.17 Capsicum annuum HOM05D017514 ORTHO05D009846 1.1e-06 58.9 339 28.3
Migut.K01293 Erythranthe guttata HOM05D003021 ORTHO05D002235 1.1e-06 58.9 61 55.7
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.1e-06 58.9 48 64.6
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 79 49.4
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 1.1e-06 58.9 79 49.4
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 1.4e-06 58.5 61 55.7
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 1.4e-06 58.5 48 64.6
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.4e-06 58.5 79 49.4
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.4e-06 58.5 61 57.4
SalBow8G1342 Salvia bowleyana HOM05D036756 ORTHO05D009846 1.4e-06 58.5 90 48.9
THA.LOC104801387 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 1.4e-06 58.5 82 47.6
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.4e-06 58.5 49 63.3
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 1.8e-06 58.2 48 64.6
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 1.8e-06 58.2 50 64.0
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 1.8e-06 58.2 71 53.5
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 1.8e-06 58.2 72 52.8
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 1.8e-06 58.2 50 64.0
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 1.8e-06 58.2 48 62.5
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 62.0
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 2.4e-06 57.8 48 64.6
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 2.4e-06 57.8 66 51.5
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 2.4e-06 57.8 476 30.7
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.4e-06 57.8 48 64.6
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 2.4e-06 57.8 50 62.0
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.1e-06 57.4 48 64.6
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 3.1e-06 57.4 72 50.0
Sopen08g002390 Solanum pennellii HOM05D017514 ORTHO05D009846 3.1e-06 57.4 332 32.5
TPR.G12338 Trifolium pratense HOM05D013197 ORTHO05D012811 3.1e-06 57.4 45 71.1
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 3.1e-06 57.4 50 62.0
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 4.1e-06 57.0 72 51.4
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 4.1e-06 57.0 61 55.7
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 4.1e-06 57.0 63 57.1
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 4.1e-06 57.0 53 56.6
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 4.1e-06 57.0 45 66.7
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 4.1e-06 57.0 50 62.0
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 4.1e-06 57.0 50 62.0
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 4.1e-06 57.0 50 64.0
Actinidia09241 Actinidia chinensis HOM05D003021 ORTHO05D002235 5.3e-06 56.6 84 47.6
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 60.0
A02p41540 Brassica napus HOM05D009040 ORTHO05D002235 5.3e-06 56.6 50 60.0
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 5.3e-06 56.6 51 60.8
Dinv38770 Davidia involucrata HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 58.0
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 64.0
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 5.3e-06 56.6 70 48.6
MD06G1199300 Malus domestica HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 60.0
Potri.015G049600 Populus trichocarpa HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 62.0
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 5.3e-06 56.6 86 45.3
TPR.G26183 Trifolium pratense HOM05D003021 ORTHO05D002235 5.3e-06 56.6 50 62.0
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 62.0
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 6.9e-06 56.2 67 49.3
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 6.9e-06 56.2 64 51.6
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 6.9e-06 56.2 51 58.8
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 60.0
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 6.9e-06 56.2 72 50.0
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 6.9e-06 56.2 50 62.0
unitig_744.g24000 Utricularia gibba HOM05D003021 ORTHO05D002235 6.9e-06 56.2 67 50.7
HPP92_010149 Vanilla planifolia HOM05D040231 ORTHO05D002235 6.9e-06 56.2 48 60.4
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 6.9e-06 56.2 53 60.4
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 9.0e-06 55.8 42 71.4
Thhalv10005353m.g Eutrema salsugineum HOM05D009040 ORTHO05D002235 9.0e-06 55.8 78 47.4
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 9.0e-06 55.8 68 51.5
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 9.0e-06 55.8 50 60.0
Sp2g24490 Schrenkiella parvula HOM05D009040 ORTHO05D002235 9.0e-06 55.8 50 60.0


User provided reference genes

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