Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 9.4e-256 886.3 442 100.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.5e-250 867.8 442 97.5
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 8.6e-241 836.6 442 92.8
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.4e-238 829.3 442 93.4
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.1e-215 752.3 442 86.2
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.7e-212 742.7 442 81.4
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 7.3e-208 727.2 441 79.8
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.6e-207 726.1 440 80.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 3.6e-207 724.9 440 80.2
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.8e-206 722.6 442 80.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 2.4e-206 722.2 440 79.3
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 3.1e-206 721.8 440 80.7
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 6.9e-206 720.7 440 80.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 5.8e-205 717.6 440 78.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 5.8e-205 717.6 429 81.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.7e-204 716.1 439 79.3
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 1.1e-203 713.4 429 82.5
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.7e-202 708.8 440 78.4
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 3.5e-202 708.4 442 77.6
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 7.8e-202 707.2 444 78.4
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.7e-201 706.1 440 78.4
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.1e-201 704.5 438 78.8
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.1e-201 704.5 438 78.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 6.6e-201 704.1 440 78.4
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 8.7e-201 703.7 445 78.2
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-200 703.0 440 77.5
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.9e-200 702.6 438 78.8
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.9e-200 702.6 440 78.6
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.9e-200 702.6 422 80.1
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.3e-200 701.8 422 80.6
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 5.6e-200 701.0 428 80.1
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 5.6e-200 701.0 440 77.3
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 7.3e-200 700.7 431 79.4
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 7.3e-200 700.7 440 77.3
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 7.3e-200 700.7 440 77.3
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.6e-199 699.5 440 77.3
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.8e-199 698.7 440 77.0
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 6.2e-199 697.6 441 77.8
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.1e-198 696.8 440 78.0
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.1e-198 696.8 440 77.3
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.1e-198 695.3 440 78.2
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.0e-198 694.9 440 77.0
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 5.3e-198 694.5 422 80.1
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.6e-197 692.2 439 76.8
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 4.5e-197 691.4 441 77.3
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 9.9e-197 690.3 440 77.5
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 9.9e-197 690.3 440 77.7
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.3e-196 689.9 439 77.2
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 2.2e-196 689.1 440 76.6
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 3.8e-196 688.3 422 78.9
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 4.9e-196 688.0 439 77.2
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 4.9e-196 688.0 439 77.2
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 8.4e-196 687.2 433 76.9
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 8.4e-196 687.2 433 76.9
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 1.1e-195 686.8 436 77.8
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.1e-195 686.8 439 77.0
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.9e-195 686.0 436 78.0
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.9e-195 686.0 434 76.7
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.4e-195 685.6 439 77.0
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 2.4e-195 685.6 436 76.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 3.2e-195 685.3 439 77.0
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 3.2e-195 685.3 420 79.8
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 4.2e-195 684.9 440 76.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 4.2e-195 684.9 442 75.1
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 5.4e-195 684.5 439 76.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 9.3e-195 683.7 441 76.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.1e-194 682.6 440 77.0
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.1e-194 682.6 442 74.7
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.7e-194 682.2 440 76.1
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 3.5e-194 681.8 441 76.0
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.5e-194 681.8 440 75.9
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 6.0e-194 681.0 441 76.4
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 6.0e-194 681.0 440 76.6
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.0e-193 680.2 440 74.5
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 8.7e-193 677.2 427 77.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 8.7e-193 677.2 424 78.1
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.1e-192 676.8 430 76.5
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.5e-192 676.4 419 78.0
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 7.4e-192 674.1 427 77.3
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.1e-191 672.5 429 75.8
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.2e-191 671.0 430 76.3
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 6.2e-191 671.0 559 62.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-190 670.2 438 76.3
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.4e-190 669.8 356 94.1
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.8e-190 669.5 441 75.3
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.9e-190 667.5 427 76.3
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.5e-189 666.4 442 73.5
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 2.6e-189 665.6 427 77.5
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 7.6e-189 664.1 453 73.1
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 9.9e-189 663.7 441 73.7
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.2e-187 658.3 422 75.1
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.6e-186 656.4 443 74.0
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.0e-185 653.7 440 74.1
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.3e-185 653.3 438 73.7
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 1.8e-185 652.9 454 73.1
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.3e-185 652.5 436 74.5
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 3.9e-185 651.7 454 73.1
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 8.7e-185 650.6 454 72.0
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.4e-184 647.5 441 73.0
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 2.1e-183 646.0 454 70.9
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.1e-183 646.0 434 73.7
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.7e-183 645.2 430 74.4
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.8e-182 642.9 432 73.4
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 9.0e-182 640.6 442 72.2
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.4e-181 638.6 421 74.1
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 5.8e-181 637.9 437 72.1
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 8.4e-180 634.0 428 73.1
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 3.2e-179 632.1 478 66.3
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.7e-178 629.0 430 71.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 3.0e-177 625.5 429 73.4
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.1e-177 624.8 430 71.2
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 5.7e-176 621.3 420 72.9
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.3e-175 620.2 439 68.6
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.1e-174 615.5 360 81.1
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.2e-173 613.6 435 73.6
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 3.6e-170 602.1 458 66.2
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.4e-169 600.1 444 68.0
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 8.2e-167 590.9 422 68.0
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.4e-165 585.5 429 67.6
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.7e-164 583.2 427 68.6
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 8.5e-156 554.3 415 66.5
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.5e-155 552.7 441 66.4
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.9e-147 526.6 335 75.8
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.9e-147 526.6 400 68.0
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 3.6e-146 522.3 433 60.0
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.6e-144 516.2 334 73.1
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 7.2e-139 498.0 351 68.7
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 1.2e-138 497.3 437 58.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 8.8e-137 491.1 423 59.3
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.5e-136 488.0 438 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.2e-133 480.7 420 58.6
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 7.5e-128 461.5 323 70.9
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 6.6e-124 448.4 394 59.1
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.3e-121 439.9 338 68.9
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 8.9e-105 384.8 283 66.4
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.2e-93 347.8 257 66.5
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.6e-90 337.4 207 78.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.2e-88 331.3 211 77.3
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 7.3e-83 312.0 232 69.0
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 4.0e-81 306.2 456 41.4
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 4.6e-77 292.7 197 71.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 6.0e-69 265.8 180 72.2
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.2e-53 214.9 160 69.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.4e-49 201.4 138 71.0
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.2e-39 167.5 222 44.6
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 5.2e-36 156.4 150 53.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 8.2e-34 149.1 149 54.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 2.5e-22 110.9 61 86.9
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.4e-11 73.9 56 60.7


User provided reference genes

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