Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 4.6e-307 1057.0 507 100.0
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 4.2e-300 1033.9 507 98.0
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 1.3e-272 942.6 515 88.5
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 3.7e-272 941.0 472 95.3
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.9e-268 928.7 513 86.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 3.6e-251 871.3 460 89.1
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 2.3e-237 825.5 497 78.9
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 3.9e-237 824.7 487 79.3
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.4e-234 816.2 490 78.0
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.8e-234 815.8 490 78.0
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 4.0e-234 814.7 511 75.9
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 1.9e-231 805.8 486 77.4
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 5.4e-231 804.3 483 77.6
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.9e-228 795.8 496 75.2
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 7.3e-228 793.9 492 77.0
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 4.7e-227 791.2 541 70.4
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 8.1e-227 790.4 513 74.1
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 1.4e-226 789.6 493 74.8
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 1.8e-226 789.3 486 77.2
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 2.4e-226 788.9 515 72.8
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 5.2e-226 787.7 493 75.3
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 8.9e-226 786.9 489 75.9
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 1.2e-225 786.6 510 74.1
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 3.4e-225 785.0 499 73.5
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 7.6e-225 783.9 500 74.4
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 1.7e-224 782.7 504 73.0
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 2.4e-223 778.9 499 72.7
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 2.1e-222 775.8 499 73.3
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 2.7e-222 775.4 486 73.9
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 6.0e-222 774.2 488 74.6
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 7.8e-222 773.9 505 71.3
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.7e-221 772.7 502 73.1
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 2.3e-221 772.3 500 73.6
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 6.6e-221 770.8 509 72.1
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.1e-220 770.0 510 72.2
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 1.9e-220 769.2 506 72.3
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 1.9e-220 769.2 501 72.5
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 2.5e-220 768.8 486 73.9
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 3.3e-220 768.5 504 71.0
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 4.3e-220 768.1 504 71.6
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 9.6e-220 766.9 488 74.6
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.2e-219 766.5 482 74.1
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 3.6e-219 765.0 489 74.4
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 4.7e-219 764.6 513 72.1
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 8.1e-219 763.8 499 71.7
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 1.1e-218 763.5 489 74.0
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 1.8e-218 762.7 490 71.4
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 5.3e-218 761.1 505 71.7
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 6.9e-218 760.8 505 71.9
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 9.0e-218 760.4 490 72.2
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 9.0e-218 760.4 480 72.9
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 2.6e-217 758.8 487 72.1
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 7.6e-217 757.3 504 71.6
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 1.3e-216 756.5 510 70.0
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 1.3e-216 756.5 490 74.1
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 4.9e-216 754.6 515 70.7
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 1.1e-215 753.4 508 70.5
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 1.9e-215 752.7 477 74.0
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 4.2e-215 751.5 509 70.5
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 9.3e-215 750.4 503 71.2
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.2e-214 750.0 509 70.5
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 2.1e-214 749.2 487 71.0
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.5e-214 748.4 503 71.0
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 1.0e-213 746.9 495 69.7
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 1.3e-213 746.5 482 72.8
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 3.0e-213 745.3 455 76.5
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 2.1e-211 739.2 502 69.1
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 6.9e-210 734.2 485 71.3
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 1.2e-209 733.4 483 69.8
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 1.2e-209 733.4 485 69.7
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.7e-208 729.6 477 73.2
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 7.1e-207 724.2 509 68.2
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 7.1e-207 724.2 485 69.3
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 7.9e-206 720.7 496 69.2
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 7.9e-206 720.7 483 70.8
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.1e-205 718.0 509 67.8
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 1.9e-204 716.1 455 73.6
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 8.1e-203 710.7 481 70.1
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 1.1e-202 710.3 474 71.3
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.8e-202 709.5 501 67.3
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 4.0e-202 708.4 481 70.1
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 5.3e-202 708.0 481 69.9
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 5.3e-202 708.0 481 69.9
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 5.3e-202 708.0 504 67.5
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 9.0e-202 707.2 461 72.7
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 9.0e-202 707.2 498 67.1
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 1.5e-201 706.4 506 65.8
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 3.4e-201 705.3 494 67.0
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 2.9e-200 702.2 512 65.2
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 1.9e-199 699.5 499 67.3
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 8.2e-195 684.1 528 64.0
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 1.0e-192 677.2 509 63.5
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 4.9e-192 674.9 479 68.1
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 2.8e-187 659.1 481 66.3
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 2.0e-172 609.8 502 60.2
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 7.4e-172 607.8 477 59.3
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 9.7e-172 607.4 358 80.7
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 5.0e-160 568.5 386 71.8
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 3.5e-153 545.8 370 71.1
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 4.4e-148 528.9 339 73.5
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 4.9e-139 498.8 332 67.5
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.2e-118 431.0 497 48.5
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.2e-114 416.4 302 65.6
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 3.5e-113 412.9 304 63.5
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 3.8e-99 366.3 237 68.4
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 1.4e-90 337.8 214 68.2
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 1.5e-76 291.2 183 73.8
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.3e-72 277.3 178 75.3
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 1.3e-62 245.0 168 70.8
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 2.6e-60 237.3 148 69.6
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 4.3e-26 123.6 104 63.5
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 8.9e-16 89.4 53 69.8
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 1.4e-13 82.0 79 53.2
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 5.0e-11 73.6 77 50.6


User provided reference genes

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