Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 3.8e-171 604.7 310 100.0
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 8.3e-166 587.0 310 97.7
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 1.5e-162 576.2 310 95.2
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 2.0e-156 555.8 310 91.9
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.5e-154 549.7 310 91.0
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 1.5e-151 539.7 310 87.4
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 1.4e-144 516.5 308 85.7
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 4.8e-129 464.9 308 76.3
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 1.9e-125 453.0 308 75.3
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 6.2e-121 438.0 310 71.9
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.4e-120 436.8 308 71.8
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 2.4e-120 436.0 308 71.8
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 3.1e-120 435.6 308 72.4
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 3.1e-120 435.6 308 72.4
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 9.0e-120 434.1 309 71.8
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 2.6e-119 432.6 306 72.5
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 3.4e-119 432.2 308 69.8
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 7.6e-119 431.0 308 73.1
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 7.6e-119 431.0 308 72.4
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 1.3e-118 430.3 309 71.5
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.3e-118 430.3 308 69.5
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 1.7e-118 429.9 308 71.4
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 2.2e-118 429.5 308 68.8
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 2.2e-118 429.5 309 72.2
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.9e-118 429.1 308 71.1
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 3.8e-118 428.7 309 69.9
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 8.4e-118 427.6 324 68.8
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 1.4e-117 426.8 308 71.4
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.4e-117 426.8 308 69.2
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 2.4e-117 426.0 308 70.8
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 1.2e-116 423.7 308 71.4
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 1.2e-116 423.7 305 69.5
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 1.6e-116 423.3 310 69.0
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 2.1e-116 422.9 311 70.7
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 4.6e-116 421.8 306 70.6
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 4.6e-116 421.8 310 68.7
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 4.6e-116 421.8 308 70.8
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 5.1e-115 418.3 308 70.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 5.1e-115 418.3 314 68.2
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 5.1e-115 418.3 308 68.5
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 8.7e-115 417.5 309 68.6
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 8.7e-115 417.5 296 72.3
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 1.1e-114 417.2 308 70.1
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.5e-114 416.8 297 70.7
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 3.3e-114 415.6 305 68.9
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 3.3e-114 415.6 310 69.0
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 7.4e-114 414.5 308 67.5
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 7.4e-114 414.5 308 69.5
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 9.6e-114 414.1 309 68.6
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 2.1e-113 412.9 311 68.5
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 4.8e-113 411.8 308 67.5
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 1.1e-112 410.6 308 69.2
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.8e-112 409.8 300 69.0
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.4e-112 409.5 309 68.0
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 6.9e-112 407.9 297 68.7
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 9.0e-112 407.5 293 69.3
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 9.0e-112 407.5 304 69.4
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 1.0e-110 404.1 293 68.6
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 1.7e-110 403.3 308 67.9
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 2.2e-110 402.9 306 69.6
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 2.9e-110 402.5 312 67.0
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 2.9e-110 402.5 309 66.0
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 1.1e-109 400.6 310 66.1
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 1.1e-109 400.6 308 67.9
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 2.5e-109 399.4 308 66.9
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 4.2e-109 398.7 311 65.6
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 5.5e-109 398.3 293 70.0
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 9.3e-109 397.5 310 66.5
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 9.3e-109 397.5 384 56.5
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 2.1e-108 396.4 310 67.4
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 3.5e-108 395.6 308 64.6
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 7.9e-108 394.4 296 67.6
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 2.3e-107 392.9 304 67.1
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 2.3e-107 392.9 304 66.8
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 3.0e-107 392.5 307 67.4
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 3.9e-107 392.1 312 65.4
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 5.1e-107 391.7 329 63.2
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 6.7e-107 391.3 307 65.1
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 1.1e-106 390.6 311 64.6
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 1.9e-106 389.8 294 68.4
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 3.3e-106 389.0 295 69.2
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 4.3e-106 388.7 311 65.3
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 5.7e-106 388.3 312 64.7
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 1.6e-105 386.7 311 67.2
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 4.8e-105 385.2 313 65.2
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 4.8e-105 385.2 313 65.2
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 1.1e-104 384.0 313 64.9
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 3.1e-104 382.5 308 63.6
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 4.1e-104 382.1 313 64.5
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 6.9e-104 381.3 295 68.5
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 3.8e-102 375.6 308 62.7
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 5.0e-102 375.2 308 63.0
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 4.6e-100 368.6 310 63.5
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 1.9e-98 363.2 296 65.5
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 1.7e-97 360.1 306 62.1
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 2.8e-97 359.4 462 46.5
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 4.8e-97 358.6 262 69.1
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 8.2e-97 357.8 289 65.7
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.2e-94 349.7 307 62.5
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 3.2e-93 345.9 308 60.7
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 6.7e-91 338.2 274 65.7
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 2.4e-88 329.7 296 56.8
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 5.3e-88 328.6 296 57.1
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 2.0e-87 326.6 303 58.4
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 1.4e-85 320.5 195 80.0
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 9.4e-85 317.8 310 56.5
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 6.7e-83 311.6 226 68.6
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 4.8e-81 305.4 310 52.6
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.4e-80 303.9 219 70.8
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 3.5e-79 299.3 275 57.8
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 4.2e-77 292.4 308 53.2
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 1.0e-75 287.7 289 56.7
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 1.0e-75 287.7 298 52.0
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.4e-75 287.3 308 52.9
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 5.0e-70 268.9 164 79.9
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 1.9e-69 266.9 290 50.7
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 1.8e-67 260.4 162 77.2
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 4.0e-67 259.2 290 47.9
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 6.8e-67 258.5 164 77.4
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 9.8e-66 254.6 294 48.6
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 9.8e-66 254.6 287 48.4
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 3.7e-65 252.7 269 53.9
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 5.9e-63 245.4 285 47.0
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.0e-59 233.0 290 46.2
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 2.0e-55 220.3 290 45.9
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 1.7e-54 217.2 171 68.4
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 6.1e-52 208.8 233 51.5
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 2.3e-51 206.8 180 61.1
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 8.0e-44 181.8 144 63.2
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 7.5e-42 175.3 117 74.4
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 1.7e-33 147.5 153 54.9
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 1.5e-18 97.8 144 39.6
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.6e-15 87.8 79 57.0
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.0e-14 85.1 257 33.1
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 1.4e-08 64.7 194 32.0


User provided reference genes

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