Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021960 Solanum pennellii HOM05D006214 ORTHO05D007723 2.5e-95 352.1 172 100.0
Solyc08g068070.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 1.3e-91 339.7 172 97.7
PGSC0003DMG400014492 Solanum tuberosum HOM05D006214 ORTHO05D007723 1.2e-89 333.2 172 95.9
Nitab4.5_0002393g0090 Nicotiana tabacum HOM05D006214 ORTHO05D007723 2.1e-86 322.4 170 92.4
Nitab4.5_0000250g0190 Nicotiana tabacum HOM05D006214 ORTHO05D007723 2.3e-85 318.9 170 91.2
Dinv30243 Davidia involucrata HOM05D006214 ORTHO05D007723 7.8e-81 303.9 170 84.7
Oeu014655.1 Olea europaea HOM05D006214 ORTHO05D007723 5.6e-79 297.7 170 83.5
Hma1.2p1_0003F.1_g003500 Hydrangea macrophylla HOM05D006214 ORTHO05D007723 7.3e-79 297.4 170 83.5
Thhalv10026389m.g Eutrema salsugineum HOM05D006214 ORTHO05D007723 1.2e-78 296.6 174 83.3
Oeu011261.1 Olea europaea HOM05D006214 ORTHO05D007723 2.8e-78 295.4 170 81.8
GSVIVG01035713001 Vitis vinifera HOM05D006214 ORTHO05D007723 2.8e-78 295.4 170 83.5
Nn8g39214 Nelumbo nucifera HOM05D006214 ORTHO05D007723 4.7e-78 294.7 170 83.5
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 6.2e-78 294.3 172 82.0
Eucgr.C02883 Eucalyptus grandis HOM05D006214 ORTHO05D007723 6.2e-78 294.3 170 82.9
Cpa.g.sc205.8 Carica papaya HOM05D006214 ORTHO05D007723 8.1e-78 293.9 172 83.1
Sp7g30450 Schrenkiella parvula HOM05D006214 ORTHO05D007723 8.1e-78 293.9 174 82.2
Aa31LG2G16930 Aethionema arabicum HOM05D006214 ORTHO05D007723 3.1e-77 292.0 174 81.0
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 4.0e-77 291.6 172 82.0
Lsat_1_v5_gn_6_11341 Lactuca sativa HOM05D006214 ORTHO05D007723 4.0e-77 291.6 172 81.4
Manes.03G064300 Manihot esculenta HOM05D006214 ORTHO05D007723 4.0e-77 291.6 168 82.1
THA.LOC104803814 Tarenaya hassleriana HOM05D006214 ORTHO05D007723 4.0e-77 291.6 174 81.0
CSS0015630 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 6.8e-77 290.8 170 81.8
CSS0049547 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 6.8e-77 290.8 170 81.8
Peaxi162Scf00105g00059 Petunia axillaris HOM05D006214 ORTHO05D007723 6.8e-77 290.8 169 84.6
Thecc.09G038200 Theobroma cacao HOM05D006214 ORTHO05D007723 6.8e-77 290.8 170 81.8
COL.COLO4_18710 Corchorus olitorius HOM05D006214 ORTHO05D007723 3.4e-76 288.5 172 80.2
Sc06g0000690 Simmondsia chinensis HOM05D006214 ORTHO05D007723 3.4e-76 288.5 172 80.2
AL7G19050 Arabidopsis lyrata HOM05D006214 ORTHO05D007723 4.4e-76 288.1 176 81.2
Migut.A00249 Erythranthe guttata HOM05D006214 ORTHO05D007723 4.4e-76 288.1 170 81.2
Potri.006G244300 Populus trichocarpa HOM05D006214 ORTHO05D007723 5.8e-76 287.7 167 82.6
BolC1t00620H Brassica oleracea HOM05D006214 ORTHO05D007723 7.5e-76 287.3 174 80.5
AUR62032401 Chenopodium quinoa HOM05D006214 ORTHO05D007723 1.3e-75 286.6 172 80.2
Aqoxy7G01701 Aquilegia oxysepala HOM05D006214 ORTHO05D007723 1.7e-75 286.2 171 81.9
TWI34G1412 Tripterygium wilfordii HOM05D006214 ORTHO05D007723 2.2e-75 285.8 169 80.5
Ciclev10009715m.g Citrus clementina HOM05D006214 ORTHO05D007723 2.9e-75 285.4 172 80.8
PGR044G2495 Punica granatum HOM05D006214 ORTHO05D007723 3.7e-75 285.0 167 82.0
Actinidia31216 Actinidia chinensis HOM05D006214 ORTHO05D007723 6.4e-75 284.3 170 81.2
AT4G32690 Arabidopsis thaliana HOM05D006214 ORTHO05D007723 6.4e-75 284.3 176 79.5
Manes.16G067000 Manihot esculenta HOM05D006214 ORTHO05D007723 8.3e-75 283.9 168 80.4
TAR624G0931 Trochodendron aralioides HOM05D006214 ORTHO05D007723 1.1e-74 283.5 169 82.2
Hund25645 Selenicereus undatus HOM05D006214 ORTHO05D007723 1.4e-74 283.1 172 80.2
HanXRQChr07g0192221 Helianthus annuus HOM05D006214 ORTHO05D007723 2.4e-74 282.3 172 77.3
PSO782G3114 Papaver somniferum HOM05D006214 ORTHO05D007723 2.4e-74 282.3 168 81.0
Duzib150G0825 Durio zibethinus HOM05D006214 ORTHO05D007723 3.2e-74 282.0 171 79.5
Cc08_g08530 Coffea canephora HOM05D006214 ORTHO05D007723 4.1e-74 281.6 170 80.0
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 9.2e-74 280.4 160 82.5
Carub.0007s0784 Capsella rubella HOM05D006214 ORTHO05D007723 2.1e-73 279.3 176 78.4
QL12p026136 Quercus lobata HOM05D006214 ORTHO05D007723 2.1e-73 279.3 166 80.1
Solyc08g068090.3 Solanum lycopersicum HOM05D006214 ORTHO05D007723 2.1e-73 279.3 166 81.3
DCAR_001036 Daucus carota HOM05D006214 ORTHO05D007723 3.5e-73 278.5 170 80.6
PSO063G0005 Papaver somniferum HOM05D006214 ORTHO05D007723 4.6e-73 278.1 170 78.8
Sed0020806 Sechium edule HOM05D006214 ORTHO05D007723 4.6e-73 278.1 170 77.6
Actinidia13304 Actinidia chinensis HOM05D006214 ORTHO05D007723 6.0e-73 277.7 153 85.6
Medtr1g008700 Medicago truncatula HOM05D006214 ORTHO05D007723 6.0e-73 277.7 168 79.2
Sopen08g021970 Solanum pennellii HOM05D006214 ORTHO05D007723 7.8e-73 277.3 166 81.3
SGA_v2.0_scaffold27G11530 Striga asiatica HOM05D006214 ORTHO05D007723 7.8e-73 277.3 176 76.7
CARHR240670 Cardamine hirsuta HOM05D006214 ORTHO05D007723 1.0e-72 276.9 176 78.4
Rhsim02G0184100 Rhododendron simsii HOM05D006214 ORTHO05D007723 1.0e-72 276.9 167 79.0
Lalb_Chr22g0361001 Lupinus albus HOM05D006214 ORTHO05D007723 1.3e-72 276.6 155 83.2
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 3.9e-72 275.0 153 84.3
MELO3C011160.2 Cucumis melo HOM05D006214 ORTHO05D007723 6.6e-72 274.2 170 77.1
Gorai.013G218300 Gossypium raimondii HOM05D006214 ORTHO05D007723 6.6e-72 274.2 170 77.6
CiPaw.07G208400 Carya illinoinensis HOM05D006214 ORTHO05D007723 8.6e-72 273.9 166 78.9
CsaV3_2G031100 Cucumis sativus L. HOM05D006214 ORTHO05D007723 8.6e-72 273.9 170 77.1
ATR1120G189 Amborella trichopoda HOM05D006214 ORTHO05D007723 3.3e-71 271.9 167 79.6
Gohir.D13G192400 Gossypium hirsutum HOM05D006214 ORTHO05D007723 5.6e-71 271.2 170 77.1
Psat6g005800 Pisum sativum HOM05D006214 ORTHO05D007723 5.6e-71 271.2 167 77.8
CiPaw.08G022500 Carya illinoinensis HOM05D006214 ORTHO05D007723 1.2e-70 270.0 166 76.5
VMungo0647G2273 Vigna mungo HOM05D006214 ORTHO05D007723 1.2e-70 270.0 167 77.8
Prupe.1G454300 Prunus persica HOM05D006214 ORTHO05D007723 2.1e-70 269.2 157 82.2
RcHm_v2.0_Chr6g0305591 Rosa chinensis HOM05D006214 ORTHO05D007723 3.6e-70 268.5 151 84.1
arahy.Tifrunner.gnm1.ann1.72Y1Y4 Arachis hypogaea HOM05D006214 ORTHO05D007723 6.2e-70 267.7 167 77.8
CANSAT25G2048 Cannabis sativa HOM05D006214 ORTHO05D007723 2.3e-69 265.8 166 77.1
Glyma.14G140400 Glycine max HOM05D006214 ORTHO05D007723 2.3e-69 265.8 167 77.2
FAN15G3028 Fragaria x ananassa HOM05D006214 ORTHO05D007723 5.2e-69 264.6 151 82.1
Lj8A606G25 Lonicera japonica HOM05D006214 ORTHO05D007723 6.8e-69 264.2 188 70.7
TPR.G12079 Trifolium pratense HOM05D006214 ORTHO05D007723 2.0e-68 262.7 170 74.1
Phvul.001G060001 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 5.8e-68 261.2 167 75.4
Ca_12821_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 7.6e-68 260.8 167 74.3
Ca_12822_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 7.6e-68 260.8 167 74.3
Haze_21823 Corylus avellana HOM05D006214 ORTHO05D007723 9.9e-68 260.4 166 75.9
Duzib168G0494 Durio zibethinus HOM05D006214 ORTHO05D007723 1.3e-67 260.0 170 74.7
arahy.Tifrunner.gnm1.ann1.8TR5WT Arachis hypogaea HOM05D006214 ORTHO05D007723 2.2e-67 259.2 167 74.9
Eucgr.L03669 Eucalyptus grandis HOM05D006214 ORTHO05D007723 3.8e-67 258.5 170 75.9
Cfa013332 Carpinus fangiana HOM05D006214 ORTHO05D007723 4.9e-67 258.1 166 75.3
SEGI_02532 Sequoiadendron giganteum HOM05D006214 ORTHO05D007723 4.9e-67 258.1 155 77.4
Lj1g0018426 Lotus japonicus HOM05D006214 ORTHO05D007723 4.1e-66 255.0 165 73.9
Lj1g0018927 Lotus japonicus HOM05D006214 ORTHO05D007723 4.1e-66 255.0 164 74.4
VMungo1309G2769 Vigna mungo HOM05D006214 ORTHO05D007723 5.4e-66 254.6 167 73.7
Ah.12g061040 Amaranthus hybridus HOM05D006214 ORTHO05D007723 7.1e-66 254.2 171 74.3
Lalb_Chr08g0243361 Lupinus albus HOM05D006214 ORTHO05D007723 7.1e-66 254.2 172 73.3
Medtr3g109420 Medicago truncatula HOM05D006214 ORTHO05D007723 9.2e-66 253.8 154 76.6
Psat0s1478g0160 Pisum sativum HOM05D006214 ORTHO05D007723 1.2e-65 253.4 154 77.3
Phvul.009G104900 Phaseolus vulgaris HOM05D006214 ORTHO05D007723 1.6e-65 253.1 168 71.4
Glyma.04G079200 Glycine max HOM05D006214 ORTHO05D007723 6.0e-65 251.1 167 73.7
FAN20G2536 Fragaria x ananassa HOM05D006214 ORTHO05D007723 3.0e-64 248.8 151 78.1
FAN27G2409 Fragaria x ananassa HOM05D006214 ORTHO05D007723 3.9e-64 248.4 151 77.5
FvH4_2g36290 Fragaria vesca HOM05D006214 ORTHO05D007723 6.6e-64 247.7 151 77.5
Zm00001eb386050 Zea mays HOM05D006214 ORTHO05D007723 1.1e-63 246.9 166 72.3
Os06g0591600 Oryza sativa ssp. japonica HOM05D006214 ORTHO05D007723 1.5e-63 246.5 171 68.4
MD15G1099500 Malus domestica HOM05D006214 ORTHO05D007723 4.3e-63 245.0 153 77.1
Ca_15627_v3 Cicer arietinum L. HOM05D006214 ORTHO05D007723 3.6e-62 241.9 163 71.2
TPR.G1342 Trifolium pratense HOM05D006214 ORTHO05D007723 4.7e-62 241.5 156 74.4
HPP92_005176 Vanilla planifolia HOM05D006214 ORTHO05D007723 1.1e-61 240.4 188 64.9
Atru.chr7.2182 Acer truncatum HOM05D006214 ORTHO05D007723 2.0e-60 236.1 139 78.4
Atru.chr7.2299 Acer truncatum HOM05D006214 ORTHO05D007723 2.0e-60 236.1 139 78.4
SMO164G0258 Selaginella moellendorffii HOM05D006214 ORTHO05D007723 6.4e-59 231.1 150 72.0
CAN.G886.7 Capsicum annuum HOM05D006214 ORTHO05D007723 2.3e-56 222.6 134 81.3
Sabra06G0191200 Salix brachista HOM05D006214 ORTHO05D007723 5.1e-56 221.5 168 69.6
AagrBONN_evm.TU.Sc2ySwM_368.1910 Anthoceros agrestis HOM05D006214 ORTHO05D007723 1.9e-55 219.5 157 68.8
AUR62024819 Chenopodium quinoa HOM05D006214 ORTHO05D007723 1.9e-55 219.5 128 81.2
Pp3c1_3380 Physcomitrium patens HOM05D006214 ORTHO05D007723 2.5e-55 219.2 155 66.5
ECA233G3302 Erigeron canadensis HOM05D006214 ORTHO05D007723 9.6e-55 217.2 316 43.0
Gohir.D05G051050 Gossypium hirsutum HOM05D006214 ORTHO05D007723 9.6e-55 217.2 179 62.6
arahy.Tifrunner.gnm1.ann1.LJ0T63 Arachis hypogaea HOM05D006214 ORTHO05D007723 3.6e-54 215.3 142 73.2
Pp3c6_250 Physcomitrium patens HOM05D006214 ORTHO05D007723 3.1e-53 212.2 157 63.7
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 4.5e-52 208.4 141 70.9
Gorai.009G052700 Gossypium raimondii HOM05D006214 ORTHO05D007723 3.3e-47 192.2 112 80.4
EL10Ac2g02522 Beta vulgaris HOM05D006214 ORTHO05D007723 5.3e-45 184.9 171 58.5
MBI04_g08934_MAGBIO Magnolia biondii HOM05D006214 ORTHO05D003073 5.5e-42 174.9 308 38.3
TAR636G1550 Trochodendron aralioides HOM05D006214 ORTHO05D007723 1.8e-37 159.8 222 45.0
ClCG08G012410 Citrullus lanatus HOM05D006214 ORTHO05D007723 6.5e-35 151.4 211 44.1
CSS0020447 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 1.7e-27 126.7 84 76.2
Potri.018G036200 Populus trichocarpa HOM05D006214 ORTHO05D007723 1.9e-26 123.2 78 74.4
CSS0007395 Camellia sinensis var. sinensis HOM05D006214 ORTHO05D007723 5.5e-26 121.7 82 69.5
Lsat_1_v5_gn_6_11301 Lactuca sativa HOM05D006214 ORTHO05D007723 2.3e-24 116.3 66 80.3
C01p47490 Brassica napus HOM05D006214 ORTHO05D007723 4.1e-21 105.5 74 64.9
BolC1t04720H Brassica oleracea HOM05D006214 ORTHO05D007723 4.4e-15 85.5 42 83.3
Peaxi162Scf00105g00513 Petunia axillaris HOM05D006214 ORTHO05D007723 1.8e-13 80.1 88 48.9
Glyma.06G080700 Glycine max HOM05D006214 ORTHO05D007723 6.5e-11 71.6 71 49.3
HanXRQChr07g0195131 Helianthus annuus HOM05D006214 ORTHO05D007723 6.5e-11 71.6 44 77.3
arahy.Tifrunner.gnm1.ann1.YGZX15 Arachis hypogaea HOM05D000254 ORTHO05D000165 8.0e-09 64.7 125 35.2
Nitab4.5_0000250g0200 Nicotiana tabacum HOM05D006214 ORTHO05D007723 1.0e-08 64.3 39 74.4


User provided reference genes

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