Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 4856.2 2510 100.0
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3595.1 2533 73.3
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3546.5 2533 72.9
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3462.5 2543 71.6
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3383.6 2522 69.9
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3380.1 2527 69.4
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3356.6 2523 69.7
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3352.4 2536 68.9
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3340.8 2548 68.7
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3340.1 2544 68.5
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3338.5 2521 68.7
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3327.3 2573 68.0
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3325.4 2543 68.7
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3320.4 2538 68.2
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3317.7 2547 67.9
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3307.7 2541 68.1
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3304.6 2532 68.1
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3300.0 2550 68.1
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3283.0 2557 67.5
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3281.5 2572 67.5
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3268.4 2539 68.0
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3263.0 2556 67.1
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3249.5 2553 66.6
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3246.1 2542 67.5
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3235.3 2848 63.0
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3229.1 2536 66.8
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3219.9 2338 71.8
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3214.5 2528 66.6
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3213.3 2553 66.1
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3212.6 2524 66.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3211.4 2549 66.8
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3210.2 2519 67.0
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3202.1 2522 66.9
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3188.3 2519 66.0
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3183.7 2542 65.7
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3180.2 2519 66.1
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3169.4 2516 65.5
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3161.7 2545 65.5
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3149.0 2585 64.9
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3147.8 2604 64.4
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3135.1 2558 65.7
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3131.7 2557 65.7
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3131.3 2562 65.3
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3119.3 2549 64.7
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3116.6 2529 65.5
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3085.8 2545 63.9
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3070.8 2536 64.6
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3037.7 2526 63.1
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3036.1 2551 63.3
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2993.8 2599 63.0
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 2978.0 2529 61.9
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 2974.1 2530 61.9
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2972.6 2232 69.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 2971.4 2531 62.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 2967.2 2526 62.4
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 2964.5 2529 61.7
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2955.6 2540 61.8
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2949.5 2532 62.4
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2914.8 2522 61.2
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 2909.0 2535 61.3
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 2908.6 2521 61.4
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2907.5 2529 61.9
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 2896.7 2557 60.6
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 2892.4 2555 60.4
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 2888.2 2410 64.3
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2786.9 2554 58.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2780.4 2233 65.4
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2751.5 1872 76.1
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2726.8 2089 68.4
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2585.1 1888 71.6
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2561.9 2035 66.2
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2420.2 1733 72.5
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2378.2 1644 74.8
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 2247.6 1477 79.8
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2242.2 2302 54.3
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2170.2 1828 62.8
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2160.2 1728 67.1
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2144.4 1777 65.2
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2117.8 1738 63.9
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 2115.5 1138 97.8
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 2040.4 1467 74.4
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2035.8 1694 64.2
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2032.3 2704 45.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1973.0 2779 43.1
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1736.9 1140 81.9
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1703.0 1189 73.7
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1679.8 1179 74.3
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1616.3 2536 39.6
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1555.8 1423 59.7
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1543.1 1098 73.6
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1490.3 1160 70.8
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1483.4 2455 39.7
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1431.0 2657 36.0
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1386.7 1610 49.7
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1303.1 1199 60.1
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1281.9 853 76.2
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1252.3 645 98.8
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1245.0 1173 59.1
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1151.7 741 78.9
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1139.4 899 64.5
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 3.4e-294 1016.5 643 80.7
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.3e-287 992.6 672 78.0
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.2e-277 960.7 1015 54.1
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 4.4e-273 946.4 1110 48.8
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 9.7e-265 918.7 609 78.7
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 7.5e-249 865.9 1046 49.5
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 7.0e-247 859.4 489 88.8
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.8e-234 818.1 895 52.4
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.3e-232 812.0 634 67.5
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.4e-224 783.1 841 57.2
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.0e-209 734.9 908 47.1
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.6e-198 698.7 384 96.4
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.1e-188 666.0 729 51.4
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 3.4e-177 627.9 496 64.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 2.5e-175 621.7 676 51.0
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 3.9e-165 587.8 839 42.4
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 3.5e-161 574.7 613 56.1
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 4.1e-154 551.2 499 61.9
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-148 532.7 478 59.4
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 7.7e-145 520.4 480 56.5
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 8.0e-142 510.4 549 52.3
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.1e-119 436.8 513 47.0
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 9.2e-114 417.2 264 76.1
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.1e-98 367.1 239 83.7
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.6e-97 361.7 180 97.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 3.0e-96 359.0 346 54.0
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 7.9e-89 334.3 204 84.3
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.3e-86 327.0 180 86.1
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 4.3e-79 302.0 293 55.6
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 6.9e-77 294.7 302 54.0
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 4.5e-76 292.0 249 58.6
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 4.9e-75 288.5 158 86.7
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 9.3e-74 284.3 151 92.7
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 5.1e-72 278.5 143 99.3
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.1e-70 273.1 338 55.9
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 4.2e-66 258.8 288 48.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 2.3e-64 253.1 219 60.7
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.3e-64 253.1 253 54.5
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-63 250.8 317 47.9
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.3e-63 249.2 207 62.8
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 9.0e-61 241.1 292 50.0
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 1.9e-42 180.3 1972 22.4
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.2e-42 179.5 252 41.3
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.0e-40 172.6 116 76.7
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 9.1e-37 161.4 105 79.0
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 3.2e-34 152.9 116 69.8
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 2.9e-27 129.8 142 47.2
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 5.5e-26 125.6 99 69.7
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 5.5e-26 125.6 99 69.7
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 4.0e-24 119.4 130 55.4
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 2.2e-22 113.6 120 50.8
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 1.8e-21 110.5 85 65.9
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.9e-19 103.2 60 78.3
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.5e-18 100.1 60 78.3
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 4.3e-18 99.4 79 67.1
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 9.5e-18 98.2 132 52.3
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.6e-15 90.1 123 52.0
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 6.4e-14 85.5 88 50.0
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 3.2e-13 83.2 47 83.0
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 3.2e-13 83.2 153 39.9
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 7.0e-13 82.0 51 78.4
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 9.2e-13 81.6 61 72.1
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 2.0e-12 80.5 121 45.5
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.0e-12 80.5 48 83.3
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.6e-12 79.3 72 63.9
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 5.9e-12 79.0 76 52.6
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.8e-09 70.1 79 60.8
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 3.6e-09 69.7 81 44.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.1e-08 66.6 70 54.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 8.9e-08 65.1 100 42.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 2.6e-07 63.5 70 54.3
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 2.6e-07 63.5 70 54.3
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 2.6e-07 63.5 61 52.5
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 9.8e-07 61.6 205 32.7
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 8.3e-06 58.5 101 41.6


User provided reference genes

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