Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 2.0e-101 372.5 191 100.0
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 7.0e-99 364.0 191 97.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 3.6e-95 351.7 191 94.2
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.4e-84 314.3 192 84.9
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 8.4e-84 313.9 192 84.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.2e-82 310.1 192 83.9
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 1.6e-82 309.7 191 83.8
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.1e-34 149.8 182 45.6
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.0e-33 147.5 202 45.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 5.1e-33 145.2 184 48.4
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 6.7e-33 144.8 188 48.4
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 6.7e-33 144.8 204 45.1
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.5e-32 143.7 190 44.2
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.3e-31 140.6 194 44.8
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-31 140.6 174 48.3
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.7e-31 140.2 199 47.2
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.7e-31 140.2 199 42.2
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 2.2e-31 139.8 204 42.2
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-31 139.8 204 43.6
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 8.2e-31 137.9 205 42.4
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.2e-31 137.9 204 43.1
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 8.2e-31 137.9 192 44.3
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.1e-30 137.5 207 44.0
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.1e-30 137.5 196 45.9
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.1e-30 137.5 196 45.9
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.8e-30 136.7 194 44.3
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 3.1e-30 136.0 187 44.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 3.1e-30 136.0 187 43.9
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 4.1e-30 135.6 193 45.6
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 5.3e-30 135.2 185 42.7
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 6.9e-30 134.8 162 49.4
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.2e-29 134.0 182 45.1
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-29 134.0 182 45.1
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.2e-29 134.0 182 45.1
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.5e-29 133.7 182 45.1
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.4e-29 132.5 182 45.6
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 5.9e-29 131.7 197 44.2
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.0e-28 131.0 204 41.2
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 5.0e-28 128.6 191 41.4
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 5.0e-28 128.6 190 43.2
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.0e-28 128.6 210 40.0
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.9e-27 126.7 221 40.7
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 4.2e-27 125.6 195 42.6
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 5.5e-27 125.2 189 43.4
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.4e-27 124.4 188 39.4
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-26 124.0 193 39.9
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-26 124.0 188 39.9
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-26 123.6 188 39.9
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 1.6e-26 123.6 185 41.1
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-26 123.2 188 40.4
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-26 122.1 188 39.4
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.7e-26 122.1 194 40.2
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 4.7e-26 122.1 194 40.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.1e-26 121.7 202 37.1
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 7.9e-26 121.3 194 43.3
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.8e-25 120.2 194 41.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-25 120.2 188 38.8
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 3.0e-25 119.4 194 40.7
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 3.0e-25 119.4 195 40.5
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-25 119.4 188 38.8
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.9e-25 119.0 187 41.7
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 3.9e-25 119.0 178 43.8
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.2e-25 118.6 188 38.8
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 8.8e-25 117.9 150 43.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.1e-24 117.5 190 41.1
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-24 117.5 187 39.6
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 1.5e-24 117.1 231 35.5
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.6e-24 116.3 187 41.7
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.3e-24 115.9 189 38.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.4e-24 114.8 187 39.0
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.2e-23 113.2 189 39.2
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.7e-23 112.5 175 39.4
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.4e-22 109.8 192 40.6
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.1e-22 109.0 186 37.1
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.6e-21 107.1 181 38.7
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 2.6e-21 106.3 183 41.5
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 4.5e-21 105.5 192 40.1
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 5.9e-21 105.1 182 39.6
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.7e-21 104.8 195 37.4
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.0e-20 104.4 174 40.2
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.3e-20 104.0 195 36.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 1.3e-20 104.0 152 41.4
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.3e-20 104.0 191 36.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.7e-20 103.6 184 38.6
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.7e-20 103.6 148 41.2
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.2e-20 103.2 206 37.9
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 2.9e-20 102.8 212 38.7
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 5.0e-20 102.1 191 37.2
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 8.5e-20 101.3 157 39.5
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 8.5e-20 101.3 181 37.0
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.9e-19 100.1 183 36.6
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 2.5e-19 99.8 179 38.0
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 7.2e-19 98.2 189 35.4
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 7.2e-19 98.2 186 36.0
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 7.2e-19 98.2 138 40.6
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.2e-18 97.4 192 35.4
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.2e-18 97.4 187 35.8
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.6e-18 97.1 189 36.0
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-18 96.3 186 36.0
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-18 96.3 186 36.0
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.7e-18 96.3 181 37.0
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.7e-18 95.5 145 42.1
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 8.0e-18 94.7 86 61.6
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.4e-17 94.0 195 34.9
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 4.0e-17 92.4 164 36.6
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 8.8e-17 91.3 198 34.3
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.5e-16 90.5 187 37.4
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.0e-16 90.1 184 37.5
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.6e-16 89.7 120 45.8
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.6e-16 89.7 187 41.7
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 2.6e-16 89.7 97 55.7
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 2.6e-16 89.7 190 35.3
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.4e-16 89.0 184 37.0
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 5.7e-16 88.6 179 35.8
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.5e-16 88.2 136 36.8
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.5e-16 88.2 136 36.8
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 7.5e-16 88.2 265 32.8
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 9.7e-16 87.8 190 34.7
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 3.7e-15 85.9 170 37.1
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 6.3e-15 85.1 184 32.6
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 6.3e-15 85.1 190 35.3
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 8.2e-15 84.7 186 33.9
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-14 84.3 191 35.1
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-14 84.3 191 35.1
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.4e-14 84.0 170 40.0
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.4e-14 84.0 92 55.4
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.8e-14 83.6 193 33.7
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-14 83.2 191 35.1
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 3.1e-14 82.8 77 51.9
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 4.1e-14 82.4 150 34.7
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 7.0e-14 81.6 176 35.8
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 7.0e-14 81.6 169 34.3
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 9.1e-14 81.3 178 33.7
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 9.1e-14 81.3 178 33.7
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 2.0e-13 80.1 188 36.2
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 2.0e-13 80.1 182 36.8
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 2.7e-13 79.7 171 37.4
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 4.5e-13 79.0 157 36.3
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.0e-12 77.8 218 34.4
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.0e-12 77.8 185 36.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-12 76.6 186 33.3
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 5.0e-12 75.5 87 48.3
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-11 73.9 88 47.7
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-11 73.6 166 35.5
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 2.5e-11 73.2 89 44.9
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 7.2e-11 71.6 149 34.2
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-10 70.5 181 30.9
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.6e-10 70.5 181 30.9
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-10 70.1 83 47.0
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-10 69.7 190 30.5
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.4e-09 67.4 146 33.6
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 6.8e-09 65.1 86 38.4
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 8.8e-09 64.7 86 37.2
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 8.8e-09 64.7 86 37.2
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-08 63.5 83 45.8
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-08 63.5 83 45.8
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 2.0e-08 63.5 83 45.8
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-08 63.5 50 54.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-08 63.5 50 54.0
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-07 60.5 135 31.1
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 4.8e-07 58.9 90 36.7
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-07 58.5 135 32.6
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-06 57.8 135 31.9
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-06 57.8 135 31.9
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 1.4e-06 57.4 134 32.1
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 1.8e-06 57.0 160 31.2
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 3.1e-06 56.2 89 33.7
Lalb_Chr24g0393701 Lupinus albus HOM05D000001 ORTHO05D004044 3.1e-06 56.2 56 48.2
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 4.1e-06 55.8 160 31.2
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 4.1e-06 55.8 79 38.0
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 5.4e-06 55.5 156 32.1
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 7.0e-06 55.1 67 41.8
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 7.0e-06 55.1 171 25.1
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 9.1e-06 54.7 63 44.4


User provided reference genes

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