Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 6.9e-53 210.3 102 100.0
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 7.7e-52 206.8 102 98.0
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 8.5e-51 203.4 102 96.1
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.0e-40 169.9 102 86.3
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.6e-39 165.2 102 83.3
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 4.5e-36 154.5 102 78.4
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.3e-19 99.8 108 50.9
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.9e-18 95.9 105 55.2
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 9.5e-18 93.6 103 52.4
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 1.2e-17 93.2 103 51.5
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 1.6e-17 92.8 107 45.8
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.8e-17 92.0 105 48.6
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.8e-17 92.0 104 52.9
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 2.8e-17 92.0 108 49.1
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 4.7e-17 91.3 107 46.7
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 8.0e-17 90.5 102 45.1
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 1.4e-16 89.7 103 44.7
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.4e-16 89.7 104 51.9
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.8e-16 89.4 104 52.9
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 1.8e-16 89.4 104 47.1
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 2.3e-16 89.0 106 51.9
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 4.0e-16 88.2 104 51.0
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 6.8e-16 87.4 105 50.5
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 6.8e-16 87.4 102 47.1
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 6.8e-16 87.4 103 44.7
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 6.8e-16 87.4 104 51.0
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 8.9e-16 87.0 109 48.6
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.5e-15 86.3 103 49.5
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 2.0e-15 85.9 79 54.4
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 2.6e-15 85.5 98 44.9
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 3.4e-15 85.1 102 47.1
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 5.8e-15 84.3 106 45.3
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 7.5e-15 84.0 109 47.7
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 7.5e-15 84.0 108 45.4
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 9.8e-15 83.6 104 47.1
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.7e-14 82.8 63 61.9
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 1.7e-14 82.8 104 45.2
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 1.7e-14 82.8 102 42.2
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 2.2e-14 82.4 102 43.1
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 2.9e-14 82.0 104 42.3
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 3.7e-14 81.6 102 40.2
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.9e-14 81.3 102 42.2
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 4.9e-14 81.3 102 43.1
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 6.4e-14 80.9 104 48.1
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 8.3e-14 80.5 106 44.3
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.1e-13 80.1 106 42.5
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.1e-13 80.1 85 49.4
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.4e-13 79.7 100 45.0
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 2.4e-13 79.0 106 42.5
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 5.4e-13 77.8 100 43.0
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 5.4e-13 77.8 101 47.5
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 5.4e-13 77.8 79 48.1
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 5.4e-13 77.8 105 39.0
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 7.0e-13 77.4 101 46.5
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 9.2e-13 77.0 64 62.5
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 1.6e-12 76.3 98 41.8
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 2.7e-12 75.5 112 42.9
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 6.0e-12 74.3 116 42.2
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 6.0e-12 74.3 117 41.0
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 7.8e-12 73.9 112 39.3
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.0e-11 73.6 86 47.7
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 1.3e-11 73.2 65 53.8
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.7e-11 72.8 115 42.6
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 1.7e-11 72.8 112 40.2
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 2.3e-11 72.4 105 43.8
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 3.9e-11 71.6 106 42.5
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 5.0e-11 71.2 105 39.0
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 6.6e-11 70.9 67 49.3
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.5e-10 69.7 65 52.3
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.5e-10 68.9 81 46.9
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 2.5e-10 68.9 58 53.4
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 2.5e-10 68.9 127 37.0
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 3.3e-10 68.6 67 46.3
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.3e-10 68.6 122 40.2
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 3.3e-10 68.6 112 40.2
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 5.6e-10 67.8 64 57.8
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 5.6e-10 67.8 64 57.8
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 5.6e-10 67.8 64 57.8
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 1.2e-09 66.6 64 53.1
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 1.6e-09 66.2 65 55.4
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 1.6e-09 66.2 65 55.4
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.6e-09 66.2 65 55.4
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.1e-09 65.9 71 47.9
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 2.1e-09 65.9 112 39.3
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 2.8e-09 65.5 65 52.3
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 3.6e-09 65.1 104 39.4
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 3.6e-09 65.1 108 38.9
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 6.2e-09 64.3 65 49.2
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 6.2e-09 64.3 68 52.9
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 1.1e-08 63.5 106 38.7
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.1e-08 63.5 66 45.5
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 1.8e-08 62.8 65 52.3
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.3e-08 62.4 67 44.8
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 2.3e-08 62.4 44 61.4
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 6.8e-08 60.8 36 63.9
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 7.5e-07 57.4 102 35.3
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 7.5e-07 57.4 47 51.1
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 9.8e-07 57.0 36 61.1
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 9.8e-07 57.0 36 61.1
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 8.3e-06 53.9 102 32.4
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 8.3e-06 53.9 102 32.4


User provided reference genes

Program Settings