Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 5.8e-149 531.6 436 100.0
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 7.7e-125 451.4 436 70.4
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 3.1e-118 429.5 441 67.8
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 2.2e-100 370.2 436 58.7
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 8.0e-90 335.1 242 78.1
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.1e-86 324.7 242 77.3
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 5.8e-72 275.8 252 67.9
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.4e-33 148.3 238 44.5
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 2.7e-29 134.0 231 45.5
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.9e-27 127.9 204 43.1
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.9e-27 127.9 208 42.3
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.9e-27 127.9 245 41.6
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.5e-27 127.5 204 43.6
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.5e-27 127.5 204 43.6
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.6e-26 124.8 241 39.0
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.8e-26 124.0 203 42.9
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 4.8e-26 123.2 251 38.6
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 6.2e-26 122.9 242 39.3
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 6.2e-26 122.9 241 41.1
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.1e-25 122.1 236 39.0
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.4e-25 121.7 226 41.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 3.1e-25 120.6 197 45.7
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 5.3e-25 119.8 229 41.5
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.6e-24 117.5 228 39.0
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 4.5e-24 116.7 232 40.9
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 5.8e-24 116.3 217 42.9
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 7.6e-24 115.9 261 37.9
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.6e-24 115.9 261 37.9
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.6e-24 115.9 261 37.9
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.0e-23 115.5 263 36.9
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.7e-23 114.8 253 40.3
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.7e-23 114.8 206 39.8
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 2.2e-23 114.4 252 40.1
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 2.2e-23 114.4 211 43.6
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-23 114.4 264 37.5
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.9e-23 114.0 223 42.6
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.9e-23 114.0 223 42.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.9e-23 113.2 223 42.6
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.5e-23 112.8 256 37.9
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 8.4e-23 112.5 200 44.5
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.9e-22 111.3 224 37.9
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 2.5e-22 110.9 254 37.4
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.1e-22 109.4 264 35.2
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 7.1e-22 109.4 238 38.7
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.6e-21 108.2 249 38.6
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.1e-21 107.8 205 37.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.7e-21 107.5 236 38.1
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.7e-21 107.5 214 36.4
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 3.5e-21 107.1 226 40.3
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 6.0e-21 106.3 207 40.6
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 6.0e-21 106.3 196 42.9
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 6.0e-21 106.3 253 38.3
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.0e-20 105.5 225 39.1
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.8e-20 104.8 242 35.5
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.3e-20 104.4 203 41.4
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.3e-20 104.4 250 34.4
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.9e-20 103.6 205 36.1
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.9e-20 103.6 265 37.0
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 5.1e-20 103.2 266 36.5
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.1e-20 103.2 199 39.7
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.7e-20 102.8 262 35.5
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.9e-19 101.3 219 39.3
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.9e-19 101.3 264 34.1
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.9e-19 101.3 159 46.5
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 5.7e-19 99.8 201 40.8
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 9.6e-19 99.0 243 37.9
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.3e-18 98.6 236 36.4
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.1e-18 97.8 262 33.6
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 3.7e-18 97.1 239 35.6
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 4.8e-18 96.7 238 35.3
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 4.8e-18 96.7 249 36.9
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.2e-18 95.9 233 38.6
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 8.2e-18 95.9 262 33.2
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 1.1e-17 95.5 144 43.1
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.4e-17 95.1 195 39.5
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 3.1e-17 94.0 227 35.7
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 4.1e-17 93.6 206 38.8
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.1e-17 93.6 209 37.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 6.9e-17 92.8 228 37.7
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 2.0e-16 91.3 226 35.0
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.0e-16 91.3 227 36.1
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.6e-16 90.9 191 40.8
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.6e-16 90.9 243 38.7
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 5.9e-16 89.7 148 44.6
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 7.6e-16 89.4 227 36.6
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-15 88.6 187 36.9
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.3e-15 88.6 244 32.4
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 3.8e-15 87.0 122 45.9
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 6.5e-15 86.3 115 44.3
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 1.1e-14 85.5 228 34.6
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 1.4e-14 85.1 265 31.7
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.4e-14 85.1 240 31.7
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.2e-14 84.0 235 32.3
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 4.2e-14 83.6 240 36.2
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 7.2e-14 82.8 143 37.1
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 9.3e-14 82.4 218 33.9
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.6e-13 81.6 217 32.7
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 2.1e-13 81.3 232 32.8
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 2.7e-13 80.9 232 32.8
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 4.6e-13 80.1 268 32.8
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 6.1e-13 79.7 256 29.3
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 6.1e-13 79.7 221 34.8
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 7.9e-13 79.3 245 31.8
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.3e-12 78.6 239 34.7
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.8e-12 78.2 243 32.9
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.8e-12 78.2 259 31.7
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 3.0e-12 77.4 221 33.5
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 3.9e-12 77.0 252 29.8
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 5.1e-12 76.6 252 29.0
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 5.1e-12 76.6 252 29.0
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 8.7e-12 75.9 242 33.9
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.1e-11 75.5 267 31.1
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.1e-11 75.5 234 32.1
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.1e-11 75.5 242 36.0
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.5e-11 75.1 110 46.4
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 1.9e-11 74.7 117 41.9
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 4.3e-11 73.6 210 34.8
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 4.3e-11 73.6 216 32.9
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.6e-10 71.6 205 33.2
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 2.8e-10 70.9 137 36.5
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.7e-10 70.5 156 35.9
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 6.3e-10 69.7 127 34.6
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 8.2e-10 69.3 254 30.7
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.4e-09 68.6 120 40.0
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.8e-09 68.2 202 30.7
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 3.1e-09 67.4 206 30.6
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 5.3e-09 66.6 245 30.2
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 5.3e-09 66.6 192 35.4
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 5.3e-09 66.6 231 31.2
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 9.0e-09 65.9 121 37.2
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-08 65.5 231 30.7
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.5e-08 65.1 207 31.4
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.5e-08 63.5 247 30.0
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 4.5e-08 63.5 208 31.7
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 5.9e-08 63.2 143 32.9
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.9e-08 63.2 224 30.4
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 7.7e-08 62.8 143 32.9
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 1.0e-07 62.4 118 39.8
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.3e-07 62.0 240 27.5
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.3e-07 62.0 206 29.6
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 1.3e-07 62.0 119 38.7
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 1.7e-07 61.6 118 40.7
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 1.7e-07 61.6 192 33.3
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 2.2e-07 61.2 226 28.8
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 2.2e-07 61.2 226 28.8
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.2e-07 61.2 224 29.9
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 2.2e-07 61.2 236 28.0
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 2.2e-07 61.2 186 31.2
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.9e-07 60.8 226 29.2
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.9e-07 60.8 226 29.2
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.9e-07 60.8 215 28.8
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.8e-07 60.5 117 36.8
Sed0027906 Sechium edule HOM05D030996 ORTHO05D004349 3.8e-07 60.5 156 30.8
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.0e-07 60.1 136 33.1
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 6.5e-07 59.7 222 30.2
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 6.5e-07 59.7 236 30.9
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 8.5e-07 59.3 213 31.5
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 1.1e-06 58.9 138 33.3
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 1.1e-06 58.9 205 31.2
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 1.1e-06 58.9 253 27.3
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 1.1e-06 58.9 238 24.8
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.1e-06 58.9 174 30.5
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.4e-06 58.5 118 36.4
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 1.4e-06 58.5 99 39.4
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 1.9e-06 58.2 227 29.1
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 1.9e-06 58.2 121 30.6
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 2.5e-06 57.8 223 33.2
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 2.5e-06 57.8 208 30.8
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 3.2e-06 57.4 195 32.3
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.2e-06 57.4 232 29.7
Lj8A559T40 Lonicera japonica HOM05D012621 ORTHO05D004349 4.2e-06 57.0 108 38.9
Zm00001eb126760 Zea mays HOM05D041344 ORTHO05D037183 4.2e-06 57.0 107 38.3
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 5.5e-06 56.6 121 33.9
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.5e-06 56.6 138 31.9
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 7.2e-06 56.2 144 37.5
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.2e-06 56.2 151 31.8
Sopen01g040010 Solanum pennellii HOM05D019980 ORTHO05D022204 7.2e-06 56.2 120 36.7
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 7.2e-06 56.2 108 35.2
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 9.4e-06 55.8 214 29.0
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 9.4e-06 55.8 244 29.5


User provided reference genes

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