Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1776.9 918 100.0
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1730.3 968 93.6
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1575.5 873 93.4
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1459.5 871 88.1
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1352.4 915 80.9
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1295.0 910 72.9
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1284.2 913 72.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1280.8 915 71.0
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1279.6 913 71.4
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1266.1 913 70.9
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1256.9 847 75.1
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1255.0 911 70.8
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1250.0 914 70.2
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1237.2 911 69.0
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1233.0 914 69.3
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1228.8 913 69.0
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1227.6 908 69.4
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 0.0e+00 1227.6 774 83.3
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1220.3 912 68.3
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1219.1 911 68.8
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1214.9 986 65.2
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1212.2 911 68.2
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1204.1 911 67.4
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1204.1 910 68.4
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1200.7 912 67.4
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1198.0 911 68.1
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1197.2 912 67.3
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1196.0 912 67.5
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1186.0 902 67.6
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1181.4 913 66.8
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1178.7 920 67.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1178.7 911 67.0
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1170.2 911 66.8
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1164.4 925 65.8
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1164.4 981 63.0
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1161.4 911 65.9
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1161.0 905 66.4
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1160.2 912 65.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1157.1 1068 59.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1156.0 908 65.7
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1156.0 906 65.7
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1152.5 920 65.7
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1152.5 910 65.9
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1151.3 924 65.5
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1151.3 925 65.7
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1150.2 951 62.6
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1150.2 855 68.4
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1147.1 912 65.9
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1144.8 873 67.4
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1144.0 920 64.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1142.5 912 65.6
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1140.2 909 65.6
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1130.9 914 65.1
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1130.2 897 65.7
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1129.0 913 65.0
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1124.4 922 64.1
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1104.4 911 62.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1102.0 1075 56.7
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1100.5 931 62.0
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 908 62.6
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 0.0e+00 1085.5 1132 54.9
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1082.0 900 64.6
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1077.8 914 60.1
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1075.1 908 60.5
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 7.5e-311 1070.5 925 62.1
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 1.3e-310 1069.7 913 60.0
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 1.6e-310 1069.3 908 59.8
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 3.6e-310 1068.1 914 59.6
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 4.8e-310 1067.8 912 60.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 4.8e-310 1067.8 917 59.9
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 6.2e-310 1067.4 911 60.6
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.4e-309 1066.2 910 60.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 3.1e-309 1065.1 910 60.3
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 2.3e-304 1048.9 910 59.5
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 6.2e-302 1040.8 763 70.0
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.6e-297 1026.2 908 58.9
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.6e-294 1016.1 910 57.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.4e-293 1012.3 865 60.6
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.4e-292 1008.4 912 57.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 5.8e-292 1007.7 1003 55.2
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.7e-291 1006.1 919 60.3
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 6.4e-291 1004.2 936 56.2
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.1e-287 993.4 706 73.7
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 4.2e-282 974.9 760 65.9
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.0e-280 970.3 944 56.6
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 3.9e-280 968.4 910 56.3
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 3.3e-279 965.3 908 55.7
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 2.4e-277 959.1 925 54.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 3.4e-276 955.3 727 67.8
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 3.0e-264 915.6 924 54.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.6e-257 893.3 721 65.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 1.4e-256 890.2 906 52.8
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.1e-255 887.1 631 72.7
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.7e-238 830.1 643 66.7
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 2.3e-224 783.1 600 67.2
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.7e-203 713.8 521 71.6
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 3.2e-197 693.0 561 63.3
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.4e-192 677.6 570 61.4
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.2e-172 611.3 549 59.0
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.5e-170 604.4 419 71.8
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.4e-167 593.2 912 41.2
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 2.1e-164 583.9 487 63.2
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 8.2e-153 545.4 431 63.8
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.1e-152 545.0 914 38.3
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 6.1e-148 529.3 460 62.6
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 1.8e-147 527.7 899 38.7
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 5.1e-147 526.2 410 64.4
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.7e-145 521.2 605 49.3
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.9e-141 507.7 896 36.9
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 5.9e-135 486.1 919 35.5
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 4.1e-128 463.4 633 44.4
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 4.4e-114 416.8 291 73.2
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.9e-110 403.7 228 95.2
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 9.5e-101 372.5 568 40.0
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.0e-98 364.8 685 36.5
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.2e-95 355.5 349 55.3
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 7.6e-90 336.3 232 74.1
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.6e-86 322.8 272 59.2
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.6e-76 292.0 283 58.7
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 6.2e-76 290.0 482 42.1
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 4.2e-64 250.8 208 63.0
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 8.1e-60 236.5 130 93.8
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.0e-58 231.9 151 72.8
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 5.5e-48 197.2 259 44.8
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 1.2e-47 196.1 144 67.4
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.4e-32 146.0 115 60.0
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 2.3e-30 138.7 95 66.3
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 5.7e-29 134.0 221 36.2
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-25 121.7 120 55.0
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.1e-24 119.8 145 51.7
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.5e-24 118.6 82 64.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.6e-23 115.9 125 44.8
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 2.1e-23 115.5 158 44.3
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.6e-21 108.6 105 58.1
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.8e-19 102.4 100 59.0
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.4e-19 102.1 83 66.3
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.2e-18 99.8 133 42.9
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.7e-18 98.6 194 34.5
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.0e-17 96.7 84 64.3
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 3.8e-17 94.7 996 21.5
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 1.8e-14 85.9 59 66.1
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 1.4e-11 76.3 1002 19.1
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 3.1e-11 75.1 103 49.5
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 5.4e-11 74.3 132 42.4
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 7.0e-11 73.9 69 49.3
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.6e-10 72.8 81 43.2
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 2.7e-10 72.0 133 42.1
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.9e-09 68.6 112 34.8
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 6.1e-07 60.8 83 39.8
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 8.8e-06 57.0 238 27.3
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 8.8e-06 57.0 83 47.0


User provided reference genes

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