Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g021110 Solanum pennellii HOM05D008288 ORTHO05D010469 3.6e-161 571.6 310 100.0
Solyc08g067170.3 Solanum lycopersicum HOM05D008288 ORTHO05D010469 2.7e-156 555.4 309 97.7
Nitab4.5_0015147g0010 Nicotiana tabacum HOM05D008288 ORTHO05D010469 2.1e-140 502.7 306 88.9
CAN.G348.1 Capsicum annuum HOM05D008288 ORTHO05D010469 2.5e-138 495.7 309 86.4
Peaxi162Scf00341g00011 Petunia axillaris HOM05D008288 ORTHO05D010469 1.1e-130 470.3 291 87.3
Nitab4.5_0000151g0060 Nicotiana tabacum HOM05D008288 ORTHO05D010469 1.6e-124 449.9 270 89.6
Actinidia22367 Actinidia chinensis HOM05D008288 ORTHO05D010469 4.3e-106 388.7 288 73.6
CSS0049569 Camellia sinensis var. sinensis HOM05D008288 ORTHO05D010469 4.3e-106 388.7 304 71.4
Hma1.2p1_0000F.1_g000730 Hydrangea macrophylla HOM05D008288 ORTHO05D010469 1.5e-103 380.2 292 70.5
Thecc.09G149300 Theobroma cacao HOM05D008288 ORTHO05D010469 1.3e-102 377.1 288 71.2
MD15G1120900 Malus domestica HOM05D008288 ORTHO05D010469 2.9e-102 375.9 288 69.8
Duzib150G0406 Durio zibethinus HOM05D008288 ORTHO05D010469 2.5e-101 372.9 291 68.0
Potri.006G251000 Populus trichocarpa HOM05D008288 ORTHO05D010469 3.2e-101 372.5 307 68.1
FAN27G1450 Fragaria x ananassa HOM05D008288 ORTHO05D010469 4.6e-100 368.6 304 67.4
FAN15G2470 Fragaria x ananassa HOM05D008288 ORTHO05D010469 6.1e-100 368.2 304 67.4
TWI34G1005 Tripterygium wilfordii HOM05D008288 ORTHO05D010469 1.8e-99 366.7 290 69.7
RcHm_v2.0_Chr6g0298581 Rosa chinensis HOM05D008288 ORTHO05D010469 8.7e-99 364.4 288 68.4
FvH4_2g29591 Fragaria vesca HOM05D008288 ORTHO05D010469 1.1e-98 364.0 303 67.7
COL.COLO4_23981 Corchorus olitorius HOM05D008288 ORTHO05D010469 1.9e-98 363.2 292 68.8
Gorai.009G050100 Gossypium raimondii HOM05D008288 ORTHO05D010469 6.3e-97 358.2 310 64.8
TAR625G1133 Trochodendron aralioides HOM05D008288 ORTHO05D010469 1.1e-96 357.5 292 66.4
Gohir.A05G047000 Gossypium hirsutum HOM05D008288 ORTHO05D010469 1.4e-96 357.1 310 64.5
PGR031G1353 Punica granatum HOM05D008288 ORTHO05D010469 3.1e-96 355.9 288 68.1
QL02p022482 Quercus lobata HOM05D008288 ORTHO05D010469 3.1e-96 355.9 288 67.7
Gohir.D05G048766 Gossypium hirsutum HOM05D008288 ORTHO05D010469 6.9e-96 354.8 310 64.2
Ciclev10010324m.g Citrus clementina HOM05D008288 ORTHO05D010469 5.9e-95 351.7 288 66.3
Atru.chr7.2381 Acer truncatum HOM05D008288 ORTHO05D010469 1.3e-94 350.5 292 65.1
MD08G1145200 Malus domestica HOM05D008288 ORTHO05D010469 3.8e-94 349.0 288 66.7
Aqoxy7G02071 Aquilegia oxysepala HOM05D008288 ORTHO05D010469 1.9e-93 346.7 288 63.2
Cpa.g.sc91.46 Carica papaya HOM05D008288 ORTHO05D010469 8.2e-89 331.3 280 65.4
CsaV3_3G046560 Cucumis sativus L. HOM05D008288 ORTHO05D010469 1.4e-88 330.5 309 58.9
DCAR_007695 Daucus carota HOM05D008288 ORTHO05D010469 1.4e-88 330.5 269 69.1
MBI04_g10412_MAGBIO Magnolia biondii HOM05D008288 ORTHO05D010469 1.4e-88 330.5 307 60.6
Phvul.009G095100 Phaseolus vulgaris HOM05D008288 ORTHO05D010469 4.1e-88 328.9 289 63.0
ClCG05G017080 Citrullus lanatus HOM05D008288 ORTHO05D010469 4.5e-87 325.5 304 60.2
Sed0020459 Sechium edule HOM05D008288 ORTHO05D010469 7.7e-87 324.7 286 61.2
VMungo1309G1559 Vigna mungo HOM05D008288 ORTHO05D010469 2.2e-86 323.2 289 61.6
Migut.A00319 Erythranthe guttata HOM05D008288 ORTHO05D010469 6.5e-86 321.6 295 62.4
SalBow4G3001 Salvia bowleyana HOM05D008288 ORTHO05D010469 1.4e-85 320.5 289 63.0
Psat0ss3186g0240 Pisum sativum HOM05D008288 ORTHO05D010469 1.6e-84 317.0 302 59.3
Prupe.1G473500 Prunus persica HOM05D008288 ORTHO05D010469 2.7e-84 316.2 293 60.8
TPR.G31773 Trifolium pratense HOM05D008288 ORTHO05D010469 2.0e-82 310.1 299 59.2
PSO455G0067 Papaver somniferum HOM05D008288 ORTHO05D010469 2.2e-81 306.6 304 58.2
Ca_15724_v3 Cicer arietinum L. HOM05D008288 ORTHO05D010469 2.8e-81 306.2 297 58.9
Eucgr.C01784 Eucalyptus grandis HOM05D008288 ORTHO05D010469 1.8e-80 303.5 309 58.9
Dinv11620 Davidia involucrata HOM05D008288 ORTHO05D010469 9.1e-80 301.2 221 73.3
Medtr3g107650 Medicago truncatula HOM05D008288 ORTHO05D010469 9.1e-80 301.2 298 57.4
PSO170G5425 Papaver somniferum HOM05D008288 ORTHO05D010469 5.5e-77 292.0 304 57.6
Haze_21560 Corylus avellana HOM05D008288 ORTHO05D010469 2.3e-75 286.6 293 58.4
Manes.16G119800 Manihot esculenta HOM05D008288 ORTHO05D010469 4.8e-73 278.9 304 55.3
MELO3C003683.2 Cucumis melo HOM05D008288 ORTHO05D010469 4.7e-68 262.3 310 49.4
Dinv30173 Davidia involucrata HOM05D008288 ORTHO05D010469 4.4e-66 255.8 291 55.3
Glyma.04G068600 Glycine max HOM05D008288 ORTHO05D010469 2.4e-64 250.0 232 60.8
Lj1g0026401 Lotus japonicus HOM05D008288 ORTHO05D010469 8.6e-62 241.5 233 57.5
Cfa013175 Carpinus fangiana HOM05D008288 ORTHO05D010469 1.6e-55 220.7 215 59.1
Lsat_1_v5_gn_1_45101 Lactuca sativa HOM05D008288 ORTHO05D010469 7.8e-55 218.4 200 61.0
CANSAT54G0155 Cannabis sativa HOM05D008288 ORTHO05D010469 1.5e-53 214.2 183 59.0
Solyc08g069220.2 Solanum lycopersicum HOM05D008288 ORTHO05D010469 4.6e-47 192.6 274 50.0
ATR0815G056 Amborella trichopoda HOM05D008288 ORTHO05D010469 5.4e-40 169.1 275 39.6
Sopen08g022840 Solanum pennellii HOM05D008288 ORTHO05D010469 3.2e-32 143.3 84 88.1
SEGI_16453 Sequoiadendron giganteum HOM05D008288 ORTHO05D010469 2.8e-20 103.6 300 30.7
CsaV3_6G001940 Cucumis sativus L. HOM05D000215 ORTHO05D008904 7.3e-13 79.0 278 27.7
ClCG11G006020 Citrullus lanatus HOM05D000215 ORTHO05D008904 1.6e-12 77.8 278 27.3
MELO3C008310.2 Cucumis melo HOM05D000215 ORTHO05D008904 1.6e-12 77.8 278 27.3
BcaC07g39773 Brassica carinata HOM05D000215 ORTHO05D001676 1.1e-11 75.1 283 28.3
SGA_v2.0_scaffold77G25280 Striga asiatica HOM05D000215 ORTHO05D002282 1.8e-11 74.3 284 25.0
Medtr7g053260 Medicago truncatula HOM05D000215 ORTHO05D002282 2.4e-11 73.9 281 25.6
SHI10321 Sapria himalayana HOM05D000215 ORTHO05D002282 4.0e-11 73.2 288 28.5
Haze_12167 Corylus avellana HOM05D000215 ORTHO05D003454 5.3e-11 72.8 278 27.0
Cfa009134 Carpinus fangiana HOM05D000215 ORTHO05D003454 9.0e-11 72.0 278 27.0
Thecc.02G244100 Theobroma cacao HOM05D000215 ORTHO05D003454 9.0e-11 72.0 286 27.6
Lalb_Chr10g0105221 Lupinus albus HOM05D000215 ORTHO05D008904 1.2e-10 71.6 278 27.3
Actinidia13517 Actinidia chinensis HOM05D000215 ORTHO05D003454 5.8e-10 69.3 281 26.0
TPR.G13914 Trifolium pratense HOM05D000215 ORTHO05D007108 7.6e-10 68.9 268 28.4
HanXRQChr07g0193091 Helianthus annuus HOM05D000215 ORTHO05D002282 9.9e-10 68.6 290 26.9
MSTRG.18818 Avicennia marina HOM05D000215 ORTHO05D002282 1.3e-09 68.2 276 25.0
Aa31LG1G16780 Aethionema arabicum HOM05D002131 ORTHO05D002141 1.7e-09 67.8 288 26.7
Rhsim12G0121400 Rhododendron simsii HOM05D000215 ORTHO05D003454 2.9e-09 67.0 281 26.7
COL.COLO4_36974 Corchorus olitorius HOM05D000215 ORTHO05D003454 3.8e-09 66.6 286 26.6
Eucgr.B00358 Eucalyptus grandis HOM05D000215 ORTHO05D003454 4.9e-09 66.2 274 28.1
Glyma.02G264200 Glycine max HOM05D000215 ORTHO05D008904 4.9e-09 66.2 278 27.0
Gohir.D02G163200 Gossypium hirsutum HOM05D000215 ORTHO05D003454 4.9e-09 66.2 278 26.3
Gorai.005G183200 Gossypium raimondii HOM05D000215 ORTHO05D003454 4.9e-09 66.2 278 26.3
HanXRQChr08g0231761 Helianthus annuus HOM05D000215 ORTHO05D002282 4.9e-09 66.2 290 27.2
Medtr2g011140 Medicago truncatula HOM05D000215 ORTHO05D007108 4.9e-09 66.2 229 31.4
Gohir.A03G140500 Gossypium hirsutum HOM05D000215 ORTHO05D003454 6.4e-09 65.9 290 27.2
Eucgr.H02615 Eucalyptus grandis HOM05D000215 ORTHO05D003454 8.4e-09 65.5 269 24.5
Lsat_1_v5_gn_2_123761 Lactuca sativa HOM05D000215 ORTHO05D008904 8.4e-09 65.5 278 27.0
PGR119G1373 Punica granatum HOM05D000215 ORTHO05D003454 8.4e-09 65.5 279 27.6
Lj6P804T36 Lonicera japonica HOM05D000215 ORTHO05D003454 1.1e-08 65.1 267 26.6
THA.LOC104805417 Tarenaya hassleriana HOM05D002131 ORTHO05D002141 1.1e-08 65.1 282 28.7
Duzib268G0442 Durio zibethinus HOM05D000215 ORTHO05D003454 1.4e-08 64.7 279 26.5
Phvul.003G199200 Phaseolus vulgaris HOM05D000215 ORTHO05D003454 2.4e-08 63.9 273 24.2
SHI02135 Sapria himalayana HOM05D000215 ORTHO05D007108 2.4e-08 63.9 212 31.6
Ciclev10030876m.g Citrus clementina HOM05D000215 ORTHO05D003454 3.2e-08 63.5 279 25.8
MD09G1261900 Malus domestica HOM05D001865 ORTHO05D001815 3.2e-08 63.5 285 23.2
Pp3c9_17040 Physcomitrium patens HOM05D000215 ORTHO05D008904 3.2e-08 63.5 287 26.1
Pp3c9_17047 Physcomitrium patens HOM05D000215 ORTHO05D008904 3.2e-08 63.5 287 26.1
MSTRG.20988 Avicennia marina HOM05D000215 ORTHO05D002282 4.2e-08 63.2 273 25.6
QL09p048947 Quercus lobata HOM05D000215 ORTHO05D002282 4.2e-08 63.2 287 25.8
Psat7g107360 Pisum sativum HOM05D000215 ORTHO05D007108 5.4e-08 62.8 214 29.0
Thecc.03G009700 Theobroma cacao HOM05D000215 ORTHO05D003454 5.4e-08 62.8 277 25.6
arahy.Tifrunner.gnm1.ann1.6FWF4F Arachis hypogaea HOM05D000215 ORTHO05D008904 7.1e-08 62.4 126 34.1
arahy.Tifrunner.gnm1.ann1.KX6XMY Arachis hypogaea HOM05D000215 ORTHO05D008904 7.1e-08 62.4 126 34.1
MBI03_g03960_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D008904 7.1e-08 62.4 278 27.0
TAR629G3507 Trochodendron aralioides HOM05D000215 ORTHO05D003454 7.1e-08 62.4 280 27.1
Medtr4g091880 Medicago truncatula HOM05D000215 ORTHO05D007108 9.3e-08 62.0 219 27.4
VMungo1215G2056 Vigna mungo HOM05D000215 ORTHO05D003454 9.3e-08 62.0 273 24.2
AUR62012536 Chenopodium quinoa HOM05D000215 ORTHO05D007108 1.6e-07 61.2 208 28.4
AUR62014659 Chenopodium quinoa HOM05D000215 ORTHO05D007108 2.1e-07 60.8 219 28.3
AUR62044176 Chenopodium quinoa HOM05D000215 ORTHO05D007108 2.1e-07 60.8 219 28.3
VMungo1215G2548 Vigna mungo HOM05D000215 ORTHO05D003454 2.1e-07 60.8 279 28.0
Aqoxy4G02432 Aquilegia oxysepala HOM05D000215 ORTHO05D008904 2.7e-07 60.5 125 33.6
DCAR_026544 Daucus carota HOM05D000215 ORTHO05D003454 2.7e-07 60.5 278 26.3
Sabra10G0143200 Salix brachista HOM05D000215 ORTHO05D008904 3.5e-07 60.1 278 25.9
LjContig00357g0010556 Lotus japonicus HOM05D000215 ORTHO05D008904 4.6e-07 59.7 126 33.3
Manes.06G103300 Manihot esculenta HOM05D000215 ORTHO05D003454 4.6e-07 59.7 272 24.3
Phvul.008G222100 Phaseolus vulgaris HOM05D000215 ORTHO05D008904 4.6e-07 59.7 126 33.3
Pp3c17_14150 Physcomitrium patens HOM05D000577 ORTHO05D003389 4.6e-07 59.7 136 34.6
Sc11g0001230 Simmondsia chinensis HOM05D000215 ORTHO05D003454 4.6e-07 59.7 282 24.8
CSS0025946 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D003454 6.0e-07 59.3 281 24.6
CSS0030448 Camellia sinensis var. sinensis HOM05D000215 ORTHO05D003454 6.0e-07 59.3 281 24.6
ClCG07G002170 Citrullus lanatus HOM05D000215 ORTHO05D002282 6.0e-07 59.3 284 25.4
Duzib106G0821 Durio zibethinus HOM05D000215 ORTHO05D008904 6.0e-07 59.3 126 35.7
MD07G1049200 Malus domestica HOM05D006338 ORTHO05D007946 6.0e-07 59.3 291 27.1
Lj4g0004386 Lotus japonicus HOM05D000215 ORTHO05D007108 7.9e-07 58.9 223 28.7
EL10Ac5g10778 Beta vulgaris HOM05D000215 ORTHO05D003454 1.0e-06 58.5 276 26.1
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 1.0e-06 58.5 273 23.8
Lalb_Chr20g0122541 Lupinus albus HOM05D000215 ORTHO05D007108 1.0e-06 58.5 281 28.8
Prupe.3G159600 Prunus persica HOM05D001865 ORTHO05D001815 1.0e-06 58.5 285 23.5
Ciclev10019147m.g Citrus clementina HOM05D000215 ORTHO05D003454 1.3e-06 58.2 271 24.7
Prupe.1G255000 Prunus persica HOM05D000215 ORTHO05D003454 1.3e-06 58.2 299 27.1
SMO141G0177 Selaginella moellendorffii HOM05D000215 ORTHO05D008904 1.3e-06 58.2 127 35.4
CiPaw.05G150000 Carya illinoinensis HOM05D000215 ORTHO05D003454 1.8e-06 57.8 275 24.7
AUR62030985 Chenopodium quinoa HOM05D000215 ORTHO05D003454 1.8e-06 57.8 274 24.8
Manes.07G132300 Manihot esculenta HOM05D000215 ORTHO05D008904 1.8e-06 57.8 118 37.3
Medtr5g083030 Medicago truncatula HOM05D000215 ORTHO05D008904 1.8e-06 57.8 118 35.6
ClCG05G025250 Citrullus lanatus HOM05D000215 ORTHO05D003454 2.3e-06 57.4 280 23.9
Dinv17864 Davidia involucrata HOM05D000215 ORTHO05D007108 2.3e-06 57.4 221 31.7
Oeu001742.1 Olea europaea HOM05D000215 ORTHO05D003454 2.3e-06 57.4 273 24.9
PSO210G4266 Papaver somniferum HOM05D000215 ORTHO05D007108 2.3e-06 57.4 198 30.8
Potri.010G185900 Populus trichocarpa HOM05D000215 ORTHO05D008904 2.3e-06 57.4 126 33.3
Ca_18466_v3 Cicer arietinum L. HOM05D000215 ORTHO05D007108 3.0e-06 57.0 219 27.4
Ca_29638_v3 Cicer arietinum L. HOM05D000215 ORTHO05D007108 3.0e-06 57.0 219 27.4
Cc11_g14570 Coffea canephora HOM05D000215 ORTHO05D003454 3.0e-06 57.0 282 23.0
COL.COLO4_34053 Corchorus olitorius HOM05D000215 ORTHO05D003454 3.0e-06 57.0 269 25.3
Haze_17255 Corylus avellana HOM05D000215 ORTHO05D008904 3.0e-06 57.0 126 33.3
MBI02_g37288_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D007108 3.0e-06 57.0 220 27.3
Oeu060184.1 Olea europaea HOM05D000215 ORTHO05D002239 3.0e-06 57.0 310 27.4
Os09g0378700 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D003454 3.0e-06 57.0 240 27.5
PSO832G3300 Papaver somniferum HOM05D000215 ORTHO05D007108 3.0e-06 57.0 198 31.3
Psat2g030880 Pisum sativum HOM05D000215 ORTHO05D008904 3.0e-06 57.0 118 34.7
GSVIVG01006112001 Vitis vinifera HOM05D000215 ORTHO05D007108 3.0e-06 57.0 216 30.1
GSVIVG01032778001 Vitis vinifera HOM05D000215 ORTHO05D008904 3.0e-06 57.0 129 34.9
Ca_05979_v3 Cicer arietinum L. HOM05D000215 ORTHO05D008904 3.9e-06 56.6 118 34.7
Duzib114G0413 Durio zibethinus HOM05D000215 ORTHO05D008904 3.9e-06 56.6 126 33.3
Peaxi162Scf00284g00067 Petunia axillaris HOM05D000215 ORTHO05D008904 3.9e-06 56.6 118 35.6
Dinv20672 Davidia involucrata HOM05D000215 ORTHO05D003454 5.1e-06 56.2 204 29.9
Pp3c24_15640 Physcomitrium patens HOM05D000215 ORTHO05D008904 6.7e-06 55.8 278 25.5
QL05p077977 Quercus lobata HOM05D000215 ORTHO05D007108 6.7e-06 55.8 212 27.8
CiPaw.10G113900 Carya illinoinensis HOM05D000215 ORTHO05D007108 8.7e-06 55.5 220 30.9
AUR62008231 Chenopodium quinoa HOM05D000215 ORTHO05D003454 8.7e-06 55.5 272 25.4
COL.COLO4_25771 Corchorus olitorius HOM05D000215 ORTHO05D008904 8.7e-06 55.5 278 26.3
Hma1.2p1_0523F.1_g172090 Hydrangea macrophylla HOM05D000215 ORTHO05D008904 8.7e-06 55.5 154 30.5
PSO063G5336 Papaver somniferum HOM05D000215 ORTHO05D003454 8.7e-06 55.5 285 23.2
TWI09G1340 Tripterygium wilfordii HOM05D000215 ORTHO05D008904 8.7e-06 55.5 126 32.5


User provided reference genes

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