Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 5.4e-212 740.7 370 100.0
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 1.5e-142 510.0 271 96.3
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 2.3e-122 443.0 252 91.3
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 5.3e-42 176.0 314 43.3
Sopen01g011760 Solanum pennellii HOM05D000176 ORTHO05D000106 1.2e-25 121.7 125 55.2
Solyc01g081584.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Solyc03g005550.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Solyc10g008267.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Sopen01g034990 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Sopen03g022250 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Sopen04g029940 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Sopen09g029870 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Sopen12g008340 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-25 121.3 110 60.9
Solyc05g026520.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.9e-25 119.4 110 60.0
Solyc07g044815.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 7.6e-25 119.0 110 60.0
PGSC0003DMG400034839 Solanum tuberosum HOM05D000176 ORTHO05D000106 3.2e-23 113.6 110 58.2
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 7.2e-23 112.5 355 30.1
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 3.5e-22 110.2 334 31.4
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 3.0e-21 107.1 324 31.5
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 3.9e-21 106.7 333 30.3
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 5.1e-21 106.3 347 29.4
PGSC0003DMG400027876 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.5e-20 104.8 110 54.5
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 4.3e-20 103.2 349 30.7
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 4.3e-20 103.2 348 30.2
PGSC0003DMG400000655 Solanum tuberosum HOM05D000176 ORTHO05D000106 4.3e-20 103.2 110 52.7
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 7.4e-20 102.4 343 29.7
PGSC0003DMG400029935 Solanum tuberosum HOM05D000176 ORTHO05D000106 7.4e-20 102.4 110 51.8
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 9.7e-20 102.1 373 29.5
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.3e-19 101.7 350 28.6
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 2.2e-19 100.9 258 32.6
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 2.8e-19 100.5 356 29.8
PGSC0003DMG400025677 Solanum tuberosum HOM05D000176 ORTHO05D000106 3.7e-19 100.1 110 52.7
Solyc10g049667.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.8e-19 99.8 110 50.9
PGSC0003DMG400010948 Solanum tuberosum HOM05D000176 ORTHO05D000106 4.8e-19 99.8 113 49.6
Solyc11g150105.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.1e-18 98.6 117 48.7
Sopen06g017070 Solanum pennellii HOM05D000176 ORTHO05D000106 1.8e-18 97.8 110 50.9
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 2.4e-18 97.4 366 30.1
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 3.1e-18 97.1 255 32.9
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 4.1e-18 96.7 339 29.2
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 5.3e-18 96.3 359 28.1
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 5.3e-18 96.3 344 29.4
Sopen06g004480 Solanum pennellii HOM05D000176 ORTHO05D000106 1.5e-17 94.7 110 50.0
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 3.4e-17 93.6 356 29.8
Solyc12g056671.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.4e-17 93.6 110 50.0
Solyc04g150170.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.5e-17 93.2 110 48.2
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 5.9e-17 92.8 356 29.5
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 7.7e-17 92.4 340 26.8
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 7.7e-17 92.4 292 31.2
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 1.3e-16 91.7 350 28.3
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 1.7e-16 91.3 117 45.3
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 1.7e-16 91.3 341 26.7
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 2.2e-16 90.9 226 32.7
Solyc05g024385.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.2e-16 90.9 110 47.3
Solyc08g016802.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.2e-16 90.9 81 59.3
PGSC0003DMG400011463 Solanum tuberosum HOM05D000176 ORTHO05D000106 3.8e-16 90.1 103 51.5
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 1.9e-15 87.8 399 26.8
PGSC0003DMG400008330 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.9e-15 87.8 106 47.2
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 3.2e-15 87.0 334 28.7
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 4.2e-15 86.7 296 29.4
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 5.5e-15 86.3 341 28.2
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 7.2e-15 85.9 348 29.0
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 9.4e-15 85.5 336 28.9
Solyc03g150138.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.1e-14 84.3 111 45.0
Solyc07g019577.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.1e-14 84.3 102 48.0
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 2.7e-14 84.0 240 30.8
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 6.1e-14 82.8 236 31.8
Solyc10g018420.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.8e-13 81.3 109 44.0
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 2.3e-13 80.9 378 23.8
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 3.0e-13 80.5 345 26.1
Solyc05g044513.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.1e-13 79.7 103 44.7
Sopen01g009560 Solanum pennellii HOM05D000176 ORTHO05D000695 5.1e-13 79.7 40 90.0
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 1.1e-12 78.6 332 27.1
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 1.1e-12 78.6 409 25.4
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 1.1e-12 78.6 274 27.4
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 1.5e-12 78.2 246 29.7
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 1.5e-12 78.2 243 31.3
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 3.3e-12 77.0 373 25.7
Solyc12g042607.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 7.4e-12 75.9 43 76.7
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 9.7e-12 75.5 393 25.2
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 1.7e-11 74.7 195 32.8
Solyc11g044453.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.7e-11 73.6 114 39.5
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 4.8e-11 73.2 410 24.9
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 6.3e-11 72.8 234 26.9
Solyc07g150121.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.1e-10 72.0 97 43.3
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 2.4e-10 70.9 387 26.1
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 2.4e-10 70.9 192 34.4
Solyc08g067125.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.4e-10 70.9 33 93.9
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 4.1e-10 70.1 327 28.4
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 6.9e-10 69.3 273 27.1
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 1.2e-09 68.6 164 35.4
Solyc07g150136.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.2e-09 68.6 40 77.5
Sopen12g026140 Solanum pennellii HOM05D000176 ORTHO05D000106 4.5e-09 66.6 89 43.8
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 5.9e-09 66.2 183 33.3
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 5.9e-09 66.2 59 54.2
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 1.0e-08 65.5 377 24.4
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 1.3e-08 65.1 368 25.8
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 3.8e-08 63.5 238 26.1
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 5.0e-08 63.2 274 26.3
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 5.0e-08 63.2 66 54.5
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 5.0e-08 63.2 174 28.2
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 1.1e-07 62.0 88 44.3
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 1.4e-07 61.6 353 24.9
Solyc08g150136.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.9e-07 61.2 30 96.7
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 2.5e-07 60.8 385 24.9
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 3.2e-07 60.5 60 55.0
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 3.2e-07 60.5 305 26.6
Solyc09g150111.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.2e-07 60.1 30 93.3
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 5.5e-07 59.7 209 31.6
Sopen01g015170 Solanum pennellii HOM05D000176 ORTHO05D000106 9.4e-07 58.9 30 86.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.6e-06 58.2 260 27.3
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 3.6e-06 57.0 344 23.8
unitig_744.g24157 Utricularia gibba HOM05D007667 ORTHO05D008033 3.6e-06 57.0 155 29.7
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 4.7e-06 56.6 159 35.8


User provided reference genes

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