Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g020510 Solanum pennellii HOM05D006532 ORTHO05D008570 1.0e-174 616.7 327 100.0
Solyc08g066640.3 Solanum lycopersicum HOM05D006532 ORTHO05D008570 2.2e-172 609.0 327 99.4
PGSC0003DMG402002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 4.8e-172 607.8 327 98.5
CAN.G400.2 Capsicum annuum HOM05D006532 ORTHO05D008570 2.2e-153 545.8 327 88.1
Nitab4.5_0003794g0050 Nicotiana tabacum HOM05D006532 ORTHO05D008570 2.7e-151 538.9 324 88.9
Peaxi162Scf00227g00717 Petunia axillaris HOM05D006532 ORTHO05D008570 7.7e-146 520.8 327 85.6
Oeu038806.1 Olea europaea HOM05D006532 ORTHO05D008570 2.3e-126 456.1 322 74.8
Actinidia13336 Actinidia chinensis HOM05D006532 ORTHO05D008570 2.0e-122 443.0 324 75.9
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 1.3e-121 440.3 322 71.4
CSS0019039 Camellia sinensis var. sinensis HOM05D006532 ORTHO05D008570 8.6e-121 437.6 323 74.3
Lsat_1_v5_gn_6_23160 Lactuca sativa HOM05D006532 ORTHO05D008570 1.1e-120 437.2 322 70.8
Cc08_g09550 Coffea canephora HOM05D006532 ORTHO05D008570 3.3e-120 435.6 322 71.7
HanXRQChr02g0050581 Helianthus annuus HOM05D006532 ORTHO05D008570 1.4e-118 430.3 321 70.4
MSTRG.11698 Avicennia marina HOM05D006532 ORTHO05D008570 2.3e-118 429.5 322 71.1
Rhsim02G0178300 Rhododendron simsii HOM05D006532 ORTHO05D008570 2.0e-117 426.4 322 70.5
TAR383G0022 Trochodendron aralioides HOM05D006532 ORTHO05D008570 1.3e-116 423.7 323 72.8
Dinv27901 Davidia involucrata HOM05D006532 ORTHO05D008570 1.2e-114 417.2 314 73.2
Migut.A00204 Erythranthe guttata HOM05D006532 ORTHO05D008570 2.0e-114 416.4 325 69.2
Prupe.1G448300 Prunus persica HOM05D006532 ORTHO05D008570 4.6e-114 415.2 322 69.6
Cfa013365 Carpinus fangiana HOM05D006532 ORTHO05D008570 1.3e-113 413.7 324 70.7
Aqoxy7G03906 Aquilegia oxysepala HOM05D006532 ORTHO05D008570 2.3e-113 412.9 326 69.9
MBI04_g45213_MAGBIO Magnolia biondii HOM05D006532 ORTHO05D008570 8.6e-113 411.0 323 69.0
SGA_v2.0_scaffold75G25009 Striga asiatica HOM05D006532 ORTHO05D008570 8.6e-113 411.0 322 69.9
THA.LOC104803760 Tarenaya hassleriana HOM05D006532 ORTHO05D008570 8.6e-113 411.0 321 69.5
CiPaw.07G204300 Carya illinoinensis HOM05D006532 ORTHO05D008570 1.5e-112 410.2 328 68.6
QL12p041387 Quercus lobata HOM05D006532 ORTHO05D008570 1.5e-112 410.2 327 69.1
PGR031G1209 Punica granatum HOM05D006532 ORTHO05D008570 2.5e-112 409.5 331 67.4
Manes.16G075600 Manihot esculenta HOM05D006532 ORTHO05D008570 7.3e-112 407.9 321 68.2
Eucgr.C00591 Eucalyptus grandis HOM05D006532 ORTHO05D008570 9.5e-112 407.5 325 68.0
GSVIVG01035625001 Vitis vinifera HOM05D006532 ORTHO05D008570 9.5e-112 407.5 322 69.9
EL10Ac2g04018 Beta vulgaris HOM05D006532 ORTHO05D008570 1.2e-111 407.1 332 68.4
AUR62009283 Chenopodium quinoa HOM05D006532 ORTHO05D008570 1.6e-111 406.8 333 68.5
Cpa.g.c24654.2 Carica papaya HOM05D006532 ORTHO05D008570 2.1e-111 406.4 327 67.3
Potri.006G238400 Populus trichocarpa HOM05D006532 ORTHO05D008570 2.8e-111 406.0 327 69.1
Ciclev10008913m.g Citrus clementina HOM05D006532 ORTHO05D008570 8.0e-111 404.4 322 69.6
Sabra06G0186500 Salix brachista HOM05D006532 ORTHO05D008570 1.4e-110 403.7 323 70.0
vmacro11058 Vaccinium macrocarpon HOM05D006532 ORTHO05D008570 1.4e-110 403.7 344 66.3
MD08G1113700 Malus domestica HOM05D006532 ORTHO05D008570 2.3e-110 402.9 322 68.0
RcHm_v2.0_Chr6g0306211 Rosa chinensis HOM05D006532 ORTHO05D008570 6.8e-110 401.4 323 66.9
SalBow4G2374 Salvia bowleyana HOM05D006532 ORTHO05D008570 1.2e-109 400.6 323 68.7
Atru.chr7.2089 Acer truncatum HOM05D006532 ORTHO05D008570 1.5e-109 400.2 323 67.5
Thecc.09G045200 Theobroma cacao HOM05D006532 ORTHO05D008570 7.5e-109 397.9 329 67.5
FvH4_2g35600 Fragaria vesca HOM05D006532 ORTHO05D008570 9.8e-109 397.5 329 66.3
Gohir.D05G048600 Gossypium hirsutum HOM05D006532 ORTHO05D008570 1.3e-108 397.1 327 67.6
AL4G17550 Arabidopsis lyrata HOM05D006532 ORTHO05D008570 2.2e-108 396.4 329 65.3
Carub.0004s0565 Capsella rubella HOM05D006532 ORTHO05D008570 6.4e-108 394.8 330 65.5
FAN15G2034 Fragaria x ananassa HOM05D006532 ORTHO05D008570 6.4e-108 394.8 329 66.0
Sp4g05660 Schrenkiella parvula HOM05D006532 ORTHO05D008570 6.4e-108 394.8 321 66.0
FAN27G1267 Fragaria x ananassa HOM05D006532 ORTHO05D008570 8.3e-108 394.4 329 65.7
BolC4t27098H Brassica oleracea HOM05D006532 ORTHO05D008570 1.9e-107 393.3 333 64.3
A04p20040 Brassica napus HOM05D006532 ORTHO05D008570 2.4e-107 392.9 324 65.1
Gorai.009G049900 Gossypium raimondii HOM05D006532 ORTHO05D008570 2.4e-107 392.9 327 67.0
Nitab4.5_0001894g0020 Nicotiana tabacum HOM05D006532 ORTHO05D008570 3.2e-107 392.5 222 92.8
Thhalv10002038m.g Eutrema salsugineum HOM05D006532 ORTHO05D008570 9.2e-107 391.0 321 65.1
C04p55710 Brassica napus HOM05D006532 ORTHO05D008570 1.2e-106 390.6 323 64.7
Sed0025155 Sechium edule HOM05D006532 ORTHO05D008570 1.6e-106 390.2 262 76.7
Hund19514 Selenicereus undatus HOM05D006532 ORTHO05D008570 2.1e-106 389.8 355 63.1
Sc23g0005260 Simmondsia chinensis HOM05D006532 ORTHO05D008570 3.5e-106 389.0 325 66.5
COL.COLO4_20970 Corchorus olitorius HOM05D006532 ORTHO05D008570 4.6e-106 388.7 315 68.6
Lalb_Chr08g0243051 Lupinus albus HOM05D006532 ORTHO05D008570 1.7e-105 386.7 268 73.5
Hma1.2p1_1138F.1_g260800 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 3.0e-105 386.0 249 80.7
AT2G25830 Arabidopsis thaliana HOM05D006532 ORTHO05D008570 3.9e-105 385.6 323 65.3
Ca_15592_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 3.9e-105 385.6 318 67.9
VMungo1309G2674 Vigna mungo HOM05D006532 ORTHO05D008570 8.6e-105 384.4 289 68.9
Glyma.06G085900 Glycine max HOM05D006532 ORTHO05D008570 2.5e-104 382.9 265 72.1
TWI63G1016 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 5.6e-104 381.7 327 64.2
Aa31LG5G9920 Aethionema arabicum HOM05D006532 ORTHO05D008570 7.3e-104 381.3 342 61.7
Phvul.009G109800 Phaseolus vulgaris HOM05D006532 ORTHO05D008570 9.5e-104 380.9 289 69.2
TPR.G15104 Trifolium pratense HOM05D006532 ORTHO05D008570 1.2e-103 380.6 308 65.6
MELO3C011141.2 Cucumis melo HOM05D006532 ORTHO05D008570 3.6e-103 379.0 326 66.0
CsaV3_2G030860 Cucumis sativus L. HOM05D006532 ORTHO05D008570 6.2e-103 378.3 327 64.8
ClCG08G012230 Citrullus lanatus HOM05D006532 ORTHO05D008570 2.3e-102 376.3 369 59.6
arahy.Tifrunner.gnm1.ann1.WYW67Z Arachis hypogaea HOM05D006532 ORTHO05D008570 3.1e-102 375.9 310 65.8
CDE02G1820 Ceratophyllum demersum HOM05D006532 ORTHO05D008570 8.9e-102 374.4 299 66.6
Lj1g0025870 Lotus japonicus HOM05D006532 ORTHO05D008570 1.2e-101 374.0 263 73.0
Ah.10g035030 Amaranthus hybridus HOM05D006532 ORTHO05D008570 2.0e-101 373.2 289 69.9
DCAR_004469 Daucus carota HOM05D006532 ORTHO05D008570 2.0e-101 373.2 323 64.1
ATR0705G133 Amborella trichopoda HOM05D006532 ORTHO05D008570 5.8e-101 371.7 259 74.1
TWI63G0186 Tripterygium wilfordii HOM05D006532 ORTHO05D008570 9.9e-101 370.9 325 64.0
Medtr3g109620 Medicago truncatula HOM05D006532 ORTHO05D008570 2.9e-100 369.4 353 58.4
CANSAT25G2817 Cannabis sativa HOM05D006532 ORTHO05D008570 3.7e-100 369.0 249 75.1
Os05g0519800 Oryza sativa ssp. japonica HOM05D006532 ORTHO05D008570 2.1e-98 363.2 329 59.0
Zm00001eb293770 Zea mays HOM05D006532 ORTHO05D008570 2.1e-98 363.2 321 59.5
Nn8g39129 Nelumbo nucifera HOM05D006532 ORTHO05D008570 3.5e-98 362.5 236 79.2
Lj8A581T27 Lonicera japonica HOM05D006532 ORTHO05D008570 4.6e-98 362.1 236 78.4
CARHR115400 Cardamine hirsuta HOM05D006532 ORTHO05D008570 8.6e-97 357.8 332 59.3
arahy.Tifrunner.gnm1.ann1.W7W61Q Arachis hypogaea HOM05D006532 ORTHO05D008570 1.1e-96 357.5 342 59.9
HPP92_022975 Vanilla planifolia HOM05D006532 ORTHO05D008570 2.4e-94 349.7 325 60.0
unitig_748.g7511 Utricularia gibba HOM05D006532 ORTHO05D008570 1.5e-93 347.1 321 60.1
PSO210G1609 Papaver somniferum HOM05D006532 ORTHO05D008570 3.8e-92 342.4 291 64.6
AUR62039700 Chenopodium quinoa HOM05D006532 ORTHO05D008570 8.7e-89 331.3 332 59.9
FAN20G1106 Fragaria x ananassa HOM05D006532 ORTHO05D008570 1.5e-88 330.5 250 67.6
Hund03396 Selenicereus undatus HOM05D006532 ORTHO05D008570 2.8e-87 326.2 256 67.2
Hma1.2p1_1753F.1_g300870 Hydrangea macrophylla HOM05D006532 ORTHO05D008570 1.0e-81 307.8 217 75.1
Duzib168G2121 Durio zibethinus HOM05D006532 ORTHO05D008570 4.8e-79 298.9 252 64.7
SEGI_00611 Sequoiadendron giganteum HOM05D006532 ORTHO05D008570 9.9e-77 291.2 216 67.6
Mapoly0061s0140 Marchantia polymorpha HOM05D006532 ORTHO05D008570 1.3e-76 290.8 260 55.8
Eucgr.C00548 Eucalyptus grandis HOM05D006532 ORTHO05D008570 2.9e-76 289.7 189 76.7
Glyma.04G084200 Glycine max HOM05D006532 ORTHO05D008570 3.2e-75 286.2 272 58.1
Psat0s1928g0160 Pisum sativum HOM05D006532 ORTHO05D008570 7.9e-74 281.6 225 63.6
Pp3c1_5570 Physcomitrium patens HOM05D006532 ORTHO05D008570 3.7e-71 272.7 301 49.5
AagrBONN_evm.TU.Sc2ySwM_117.144 Anthoceros agrestis HOM05D006532 ORTHO05D008570 4.8e-71 272.3 260 53.1
Haze_21888 Corylus avellana HOM05D006532 ORTHO05D008570 5.8e-69 265.4 260 60.0
SMO145G0084 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 2.1e-63 246.9 263 47.5
SMO134G0241 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 9.0e-62 241.5 251 51.0
CBR_g34330 Chara braunii HOM05D006532 ORTHO05D008570 5.8e-61 238.8 276 48.2
SMO367G0375 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 7.6e-61 238.4 250 52.8
SMO139G0131 Selaginella moellendorffii HOM05D006532 ORTHO05D008570 6.5e-60 235.3 255 47.8
MCO01G189 Micromonas commoda HOM05D006532 ORTHO05D008570 2.5e-51 206.8 269 42.4
Gohir.A05G046832 Gossypium hirsutum HOM05D006532 ORTHO05D008570 6.9e-46 188.7 129 76.0
Cre02.g097550 Chlamydomonas reinhardtii HOM05D006532 ORTHO05D008570 2.1e-42 177.2 257 40.1
SGA_v2.0_scaffold88G27190 Striga asiatica HOM05D006532 ORTHO05D008570 2.4e-38 163.7 126 68.3
Gohir.A05G046766 Gossypium hirsutum HOM05D006532 ORTHO05D008570 3.1e-38 163.3 163 58.9
PRCOL_00005453 Prasinoderma coloniale HOM05D006532 ORTHO05D008570 1.3e-36 157.9 247 36.0
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 6.7e-33 145.6 317 38.5
PGSC0003DMG401002229 Solanum tuberosum HOM05D006532 ORTHO05D008570 1.0e-28 131.7 86 80.2
Ca_28981_v3 Cicer arietinum L. HOM05D006532 ORTHO05D008570 2.0e-24 117.5 245 30.2
Ca_28852_v3 Cicer arietinum L. HOM05D006532 ORTHO05D148468 9.1e-22 108.6 271 32.8
Actinidia30278 Actinidia chinensis HOM05D005233 ORTHO05D006308 7.5e-08 62.4 69 62.3
Hund03397 Selenicereus undatus HOM05D006532 ORTHO05D381031 7.5e-08 62.4 31 100.0


User provided reference genes

Program Settings