Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g020370 Solanum pennellii HOM05D002665 ORTHO05D002991 2.9e-46 188.7 137 100.0
Sopen05g028260 Solanum pennellii HOM05D002420 ORTHO05D002422 5.3e-40 167.9 127 99.2
CAN.G940.9 Capsicum annuum HOM05D002665 ORTHO05D002991 3.6e-28 128.6 109 95.4
Nitab4.5_0000860g0180 Nicotiana tabacum HOM05D002665 ORTHO05D002991 5.2e-27 124.8 128 80.5
Peaxi162Scf00045g01455 Petunia axillaris HOM05D002665 ORTHO05D002991 1.7e-25 119.8 109 89.9
Nitab4.5_0012989g0010 Nicotiana tabacum HOM05D002665 ORTHO05D002991 2.9e-22 109.0 116 82.8
Nitab4.5_0006603g0020 Nicotiana tabacum HOM05D002665 ORTHO05D002991 2.3e-19 99.4 109 77.1
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 3.0e-19 99.0 109 78.0
PGSC0003DMG400014854 Solanum tuberosum HOM05D002665 ORTHO05D002991 4.0e-19 98.6 109 84.4
SGA_v2.0_scaffold27G11647 Striga asiatica HOM05D002665 ORTHO05D002991 8.8e-19 97.4 109 73.4
Peaxi162Scf00213g00118 Petunia axillaris HOM05D002665 ORTHO05D002991 1.2e-18 97.1 109 73.4
CAN.G195.4 Capsicum annuum HOM05D002665 ORTHO05D002991 2.0e-18 96.3 109 73.4
Lj8C424T3 Lonicera japonica HOM05D002665 ORTHO05D002991 3.7e-17 92.0 109 73.4
Lj8C430T1 Lonicera japonica HOM05D002665 ORTHO05D002991 3.7e-17 92.0 109 73.4
Solyc08g074290.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 4.8e-17 91.7 109 71.6
Sopen08g022940 Solanum pennellii HOM05D002665 ORTHO05D002991 4.8e-17 91.7 109 71.6
Dinv13248 Davidia involucrata HOM05D002665 ORTHO05D002991 6.3e-17 91.3 109 71.6
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 6.3e-17 91.3 109 69.7
Potri.018G003700 Populus trichocarpa HOM05D002665 ORTHO05D002991 6.3e-17 91.3 113 64.6
Sabra18G0001800 Salix brachista HOM05D002665 ORTHO05D002991 6.3e-17 91.3 113 63.7
SGA_v2.0_scaffold193G40649 Striga asiatica HOM05D002665 ORTHO05D002991 1.4e-16 90.1 109 74.3
Cc00_g12740 Coffea canephora HOM05D002665 ORTHO05D002991 1.8e-16 89.7 107 73.8
Sopen08g002000 Solanum pennellii HOM05D002665 ORTHO05D002991 4.1e-16 88.6 109 81.7
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 5.3e-16 88.2 109 67.0
Oeu059295.1 Olea europaea HOM05D002665 ORTHO05D002991 1.2e-15 87.0 109 65.1
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.6e-15 86.7 109 74.3
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.6e-15 86.7 109 74.3
Solyc08g006030.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 2.0e-15 86.3 109 80.7
Potri.006G276900 Populus trichocarpa HOM05D002665 ORTHO05D002991 4.5e-15 85.1 109 56.0
Actinidia22249 Actinidia chinensis HOM05D002665 ORTHO05D002991 5.9e-15 84.7 109 74.3
Sabra06G0214600 Salix brachista HOM05D002665 ORTHO05D002991 5.9e-15 84.7 109 67.9
EL10Ac2g03706 Beta vulgaris HOM05D002665 ORTHO05D002991 7.7e-15 84.3 113 66.4
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 1.0e-14 84.0 109 71.6
Gohir.D05G068300 Gossypium hirsutum HOM05D002665 ORTHO05D002991 1.0e-14 84.0 109 71.6
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 1.0e-14 84.0 109 71.6
Oeu026032.1 Olea europaea HOM05D002665 ORTHO05D002991 1.0e-14 84.0 109 64.2
Cfa013322 Carpinus fangiana HOM05D002665 ORTHO05D002991 1.3e-14 83.6 109 65.1
COL.COLO4_18617 Corchorus olitorius HOM05D002665 ORTHO05D002991 1.3e-14 83.6 109 63.3
TAR383G0456 Trochodendron aralioides HOM05D002665 ORTHO05D002991 1.3e-14 83.6 113 63.7
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 2.2e-14 82.8 109 59.6
MSTRG.11823 Avicennia marina HOM05D002665 ORTHO05D002991 5.0e-14 81.6 109 68.8
Ca_15631_v3 Cicer arietinum L. HOM05D002665 ORTHO05D002991 6.5e-14 81.3 113 64.6
Lj7A750G48 Lonicera japonica HOM05D002665 ORTHO05D002991 6.5e-14 81.3 109 71.6
TWI34G1233 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 1.5e-13 80.1 109 59.6
VMungo1309G0855 Vigna mungo HOM05D002665 ORTHO05D002991 1.5e-13 80.1 113 67.3
GSVIVG01035555001 Vitis vinifera HOM05D002665 ORTHO05D002991 1.9e-13 79.7 109 59.6
Haze_21811 Corylus avellana HOM05D002665 ORTHO05D002991 2.5e-13 79.3 109 56.9
AUR62020636 Chenopodium quinoa HOM05D002665 ORTHO05D002991 4.2e-13 78.6 107 67.3
AUR62038745 Chenopodium quinoa HOM05D002665 ORTHO05D002991 4.2e-13 78.6 109 66.1
TWI63G0924 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 9.4e-13 77.4 109 60.6
Migut.A00460 Erythranthe guttata HOM05D002665 ORTHO05D002991 1.6e-12 76.6 109 68.8
Sc09g0007840 Simmondsia chinensis HOM05D002665 ORTHO05D002991 1.6e-12 76.6 109 61.5
ECA240G1424 Erigeron canadensis HOM05D002665 ORTHO05D002991 2.1e-12 76.3 109 65.1
HanXRQChr03g0082951 Helianthus annuus HOM05D002665 ORTHO05D002991 2.7e-12 75.9 109 67.9
Nn2g12753 Nelumbo nucifera HOM05D002665 ORTHO05D002991 2.7e-12 75.9 109 52.3
Prupe.1G455000 Prunus persica HOM05D002665 ORTHO05D002991 2.7e-12 75.9 109 65.1
Hund03271 Selenicereus undatus HOM05D002665 ORTHO05D002991 2.7e-12 75.9 109 67.0
Eucgr.C02115 Eucalyptus grandis HOM05D002665 ORTHO05D002991 3.6e-12 75.5 109 64.2
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 4.7e-12 75.1 108 58.3
Os09g0497700 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 6.1e-12 74.7 113 61.1
CiPaw.07G208800 Carya illinoinensis HOM05D002665 ORTHO05D002991 1.0e-11 73.9 113 64.6
Sc06g0001220 Simmondsia chinensis HOM05D002665 ORTHO05D002991 1.8e-11 73.2 113 65.5
Zm00001eb174670 Zea mays HOM05D002665 ORTHO05D002991 2.3e-11 72.8 113 64.6
CiPaw.08G022000 Carya illinoinensis HOM05D002665 ORTHO05D002991 3.0e-11 72.4 113 64.6
MBI16_g34881_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 5.2e-11 71.6 52 55.8
Zm00001eb022880 Zea mays HOM05D002665 ORTHO05D002991 5.2e-11 71.6 107 66.4
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 1.2e-10 70.5 105 69.5
TAR626G1487 Trochodendron aralioides HOM05D002665 ORTHO05D002991 3.4e-10 68.9 109 67.0
CDE06G0091 Ceratophyllum demersum HOM05D002665 ORTHO05D002991 4.4e-10 68.6 109 56.0
HanXRQChr17g0538701 Helianthus annuus HOM05D002665 ORTHO05D002991 4.4e-10 68.6 109 65.1
MD08G1121400 Malus domestica HOM05D002665 ORTHO05D002991 4.4e-10 68.6 109 59.6
Manes.03G002000 Manihot esculenta HOM05D002665 ORTHO05D002991 4.4e-10 68.6 109 60.6
Solyc05g010750.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 4.4e-10 68.6 52 51.9
Dinv36353 Davidia involucrata HOM05D002665 ORTHO05D002991 5.7e-10 68.2 109 67.0
Lsat_1_v5_gn_5_59921 Lactuca sativa HOM05D002665 ORTHO05D002991 5.7e-10 68.2 109 67.9
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 5.7e-10 68.2 109 67.9
Nn8g40895 Nelumbo nucifera HOM05D002665 ORTHO05D002991 7.5e-10 67.8 114 57.9
HanXRQChr13g0411771 Helianthus annuus HOM05D002665 ORTHO05D002991 9.8e-10 67.4 109 65.1
Aqoxy7G02750 Aquilegia oxysepala HOM05D002665 ORTHO05D002991 1.3e-09 67.0 113 55.8
ClCG08G012460 Citrullus lanatus HOM05D002665 ORTHO05D002991 1.3e-09 67.0 109 53.2
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 1.3e-09 67.0 109 59.6
MBI13_g31541_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 2.2e-09 66.2 52 50.0
Atru.chr7.2676 Acer truncatum HOM05D002665 ORTHO05D002991 3.7e-09 65.5 112 63.4
Lj1g0017245 Lotus japonicus HOM05D002665 ORTHO05D002991 3.7e-09 65.5 113 64.6
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 4.8e-09 65.1 112 53.6
Lsat_1_v5_gn_3_24601 Lactuca sativa HOM05D002665 ORTHO05D002991 4.8e-09 65.1 107 65.4
PGR044G2224 Punica granatum HOM05D002665 ORTHO05D002991 4.8e-09 65.1 109 43.1
CANSAT25G0789 Cannabis sativa HOM05D002665 ORTHO05D002991 6.3e-09 64.7 113 61.1
Os08g0519400 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 6.3e-09 64.7 113 63.7
Zm00001eb035730 Zea mays HOM05D002665 ORTHO05D002991 6.3e-09 64.7 109 60.6
CsaV3_3G047330 Cucumis sativus L. HOM05D002665 ORTHO05D002991 8.3e-09 64.3 128 59.4
MD15G1100200 Malus domestica HOM05D002665 ORTHO05D002991 1.8e-08 63.2 51 47.1
MD15G1100300 Malus domestica HOM05D002665 ORTHO05D002991 1.8e-08 63.2 109 31.2
AT2G24420 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 2.4e-08 62.8 109 57.8
SGA_v2.0_scaffold169G38589 Striga asiatica HOM05D000033 ORTHO05D001317 2.4e-08 62.8 116 54.3
TAR383G0485 Trochodendron aralioides HOM05D002665 ORTHO05D002991 2.4e-08 62.8 109 33.0
AL4G14850 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 4.1e-08 62.0 109 56.9
MELO3C003595.2 Cucumis melo HOM05D002665 ORTHO05D002991 4.1e-08 62.0 109 64.2
CsaV3_2G031150 Cucumis sativus L. HOM05D002665 ORTHO05D002991 4.1e-08 62.0 114 51.8
ECA246G1443 Erigeron canadensis HOM05D002665 ORTHO05D002991 4.1e-08 62.0 107 57.9
QL12p026047 Quercus lobata HOM05D002665 ORTHO05D002991 5.4e-08 61.6 109 58.7
Ah.11g044010 Amaranthus hybridus HOM05D002665 ORTHO05D002991 7.0e-08 61.2 113 58.4
Lsat_1_v5_gn_3_138801 Lactuca sativa HOM05D054523 ORTHO05D048362 9.1e-08 60.8 49 49.0
vmacro20828 Vaccinium macrocarpon HOM05D002665 ORTHO05D002991 9.1e-08 60.8 107 63.6
Glyma.06G080100 Glycine max HOM05D002665 ORTHO05D002991 1.6e-07 60.1 109 62.4
MELO3C011165.2 Cucumis melo HOM05D002665 ORTHO05D002991 2.7e-07 59.3 114 51.8
Hund19391 Selenicereus undatus HOM05D002665 ORTHO05D002991 2.7e-07 59.3 109 56.9
arahy.Tifrunner.gnm1.ann1.D04E55 Arachis hypogaea HOM05D002665 ORTHO05D002991 5.9e-07 58.2 111 59.5
arahy.Tifrunner.gnm1.ann1.DQG69K Arachis hypogaea HOM05D002665 ORTHO05D002991 5.9e-07 58.2 111 60.4
CSS0015738 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 5.9e-07 58.2 113 59.3
Cpa.g.sc328.1 Carica papaya HOM05D002665 ORTHO05D002991 5.9e-07 58.2 47 53.2
Aa31LG7G11370 Aethionema arabicum HOM05D002665 ORTHO05D002991 7.7e-07 57.8 109 55.0
BcaC07g40934 Brassica carinata HOM05D002665 ORTHO05D002991 1.0e-06 57.4 109 45.9
C08p39280 Brassica napus HOM05D002665 ORTHO05D002991 1.0e-06 57.4 109 45.9
BolC8t51501H Brassica oleracea HOM05D002665 ORTHO05D002991 1.0e-06 57.4 109 45.9
Phvul.009G104300 Phaseolus vulgaris HOM05D002665 ORTHO05D002991 1.0e-06 57.4 113 61.1
TPR.G1355 Trifolium pratense HOM05D002665 ORTHO05D002991 1.0e-06 57.4 111 50.5
Lalb_Chr11g0064281 Lupinus albus HOM05D002665 ORTHO05D002991 1.3e-06 57.0 111 63.1
DCAR_004551 Daucus carota HOM05D002665 ORTHO05D002991 1.7e-06 56.6 109 41.3
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 1.7e-06 56.6 107 60.7
BcaC09g51913 Brassica carinata HOM05D002665 ORTHO05D002991 2.3e-06 56.2 109 55.0
C01p07700 Brassica napus HOM05D002665 ORTHO05D002991 2.3e-06 56.2 109 56.9
BolC1t00751H Brassica oleracea HOM05D002665 ORTHO05D002991 2.3e-06 56.2 109 55.0
Lalb_Chr23g0269331 Lupinus albus HOM05D002665 ORTHO05D002991 2.3e-06 56.2 111 61.3
A03p60640 Brassica napus HOM05D002665 ORTHO05D002991 2.9e-06 55.8 109 59.6
A09p56320 Brassica napus HOM05D002665 ORTHO05D002991 2.9e-06 55.8 109 55.0
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 2.9e-06 55.8 109 58.7
BraA09t41027Z Brassica rapa HOM05D002665 ORTHO05D002991 2.9e-06 55.8 109 55.0
Ciclev10008249m.g Citrus clementina HOM05D002665 ORTHO05D002991 2.9e-06 55.8 109 57.8
Medtr3g109330 Medicago truncatula HOM05D002665 ORTHO05D002991 2.9e-06 55.8 113 60.2
Aa31LG2G19020 Aethionema arabicum HOM05D002665 ORTHO05D002991 3.8e-06 55.5 109 64.2
BcaNung05320 Brassica carinata HOM05D002665 ORTHO05D002991 3.8e-06 55.5 109 56.0
A01p06970 Brassica napus HOM05D002665 ORTHO05D002991 3.8e-06 55.5 109 55.0
BraA01t00645Z Brassica rapa HOM05D002665 ORTHO05D002991 3.8e-06 55.5 109 55.0
Sed0013595 Sechium edule HOM05D002665 ORTHO05D002991 3.8e-06 55.5 128 57.0
HanXRQChr17g0537281 Helianthus annuus HOM05D002665 ORTHO05D002991 5.0e-06 55.1 49 44.9
TAR625G0782 Trochodendron aralioides HOM05D002665 ORTHO05D002991 5.0e-06 55.1 121 58.7


User provided reference genes

Program Settings