Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 3941.0 2002 100.0
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 3522.3 1993 90.1
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 3059.2 2028 78.9
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 2930.2 1507 98.6
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2461.0 1954 65.8
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2390.9 2014 63.5
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2340.8 2006 62.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2339.3 1897 64.7
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2336.2 1884 65.2
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2271.5 1969 61.2
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2266.1 1927 61.8
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2253.0 1961 61.8
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2252.2 1959 60.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2233.0 2066 59.4
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2222.6 1934 60.8
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2202.9 1991 59.1
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2179.1 1955 59.1
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2176.0 1981 59.3
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2171.0 2044 58.6
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2169.0 1968 59.1
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2166.3 2031 57.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2158.6 1917 60.1
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2157.5 1979 59.6
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2151.3 1999 58.4
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2150.6 1958 58.8
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2147.1 2005 58.0
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2139.4 2046 56.2
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2131.3 1929 58.9
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2131.3 1921 59.4
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2106.3 1981 57.5
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2103.2 1970 57.1
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2102.4 1989 57.4
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2082.4 1975 57.4
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2082.4 1976 56.6
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 2074.7 1988 58.3
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2072.0 1978 57.1
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2065.0 1965 56.7
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2058.5 1993 56.4
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2053.5 1979 57.0
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2051.2 1916 58.0
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2050.4 1937 58.0
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2050.0 1947 56.9
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2043.9 1943 57.1
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2035.0 1949 56.5
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2033.1 2006 55.6
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2032.3 2003 56.1
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2025.0 1959 56.0
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2020.7 1949 55.8
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2010.3 1927 56.4
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2001.9 1943 55.6
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1998.8 2040 53.9
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1995.7 2046 53.6
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1993.8 1964 55.2
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1989.2 1918 56.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1983.0 1945 55.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1973.7 1960 55.8
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1971.8 2048 53.5
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 1967.6 2052 53.8
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1965.7 1953 54.6
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1957.2 2020 53.3
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1947.9 2085 52.1
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1946.0 1941 54.9
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1932.1 1948 54.3
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 1924.8 1946 53.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1911.7 2107 51.0
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1909.4 1792 57.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1906.0 1950 54.1
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1894.8 1971 53.1
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1887.5 1952 52.5
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1884.8 1935 52.8
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1881.3 1918 52.7
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1880.5 1942 52.6
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1867.8 1903 53.2
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1866.3 1931 52.4
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1859.7 1929 52.2
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1833.5 1929 51.5
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1831.2 1917 52.3
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1826.6 1893 52.5
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1825.4 1959 51.1
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1823.1 2072 51.3
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1822.8 1872 53.5
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1812.3 1958 50.7
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1709.1 2113 46.6
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1567.0 1923 47.6
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1470.7 1777 47.2
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1468.0 1614 50.2
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1431.8 1178 64.3
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1378.2 1358 56.4
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1345.9 1391 56.8
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1193.3 2235 36.8
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 0.0e+00 1168.7 792 77.7
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1166.8 1939 37.8
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1110.9 2195 34.6
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 1.8e-298 1030.4 2121 33.6
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 8.0e-294 1015.0 803 67.0
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 6.1e-278 962.2 495 98.6
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 4.6e-233 813.1 809 57.5
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 1.1e-229 802.0 713 58.8
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 2.4e-226 790.8 2105 30.7
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.7e-219 768.1 1170 39.5
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 1.8e-184 651.7 382 86.9
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 4.4e-183 647.1 757 50.5
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 7.5e-167 593.2 776 45.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.9e-163 581.3 740 47.2
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.6e-76 293.1 217 65.9
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.1e-76 292.7 200 71.5
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 5.3e-64 251.5 483 36.9
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.7e-62 246.5 222 59.0
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 8.8e-59 234.2 271 46.5
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 2.6e-58 232.6 356 39.9
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.2e-55 223.8 337 41.8
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 5.2e-51 208.4 124 78.2
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 3.4e-34 152.5 253 39.1
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 3.9e-30 139.0 80 85.0
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.2e-28 134.0 197 39.1
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 4.7e-28 132.1 151 48.3
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 6.8e-27 128.3 127 48.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 4.4e-18 99.0 122 50.0
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 4.1e-16 92.4 132 41.7
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 9.2e-16 91.3 88 55.7
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.6e-15 89.0 69 59.4
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 7.8e-15 88.2 61 65.6
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 3.6e-12 79.3 132 35.6
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 1.2e-10 74.3 69 50.7
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.5e-10 73.9 71 49.3
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 1.6e-07 63.9 88 48.9


User provided reference genes

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