Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.3e-286 987.6 489 100.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.0e-279 966.1 489 98.0
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 6.8e-223 777.3 509 76.0
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.8e-219 763.8 505 76.0
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.7e-213 746.1 418 89.0
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 5.1e-202 708.0 498 71.9
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.3e-114 416.8 516 46.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.7e-109 400.6 505 45.5
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.1e-106 391.3 510 44.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.5e-105 387.5 498 45.2
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.6e-105 386.7 505 46.3
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 2.2e-104 383.6 484 47.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.7e-104 382.9 486 45.5
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 9.6e-100 368.2 471 46.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-98 364.8 504 43.5
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.8e-98 364.0 496 44.4
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.3e-96 357.8 497 42.7
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 4.9e-96 355.9 510 42.4
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 9.3e-95 351.7 508 41.9
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 7.8e-94 348.6 525 40.8
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.0e-93 346.7 497 42.1
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.9e-93 346.3 506 41.9
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 2.1e-91 340.5 479 42.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.8e-90 337.4 498 41.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.5e-89 334.3 469 42.4
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.8e-88 329.7 496 39.7
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 4.2e-87 326.2 504 38.5
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.8e-83 313.5 501 39.1
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.8e-82 310.8 506 36.6
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.8e-82 310.8 503 39.0
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.6e-81 305.4 490 39.0
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 4.9e-80 302.8 379 45.4
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 8.4e-80 302.0 513 38.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.7e-78 297.0 500 37.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.6e-78 296.2 502 37.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 4.6e-78 296.2 502 38.0
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 4.6e-78 296.2 509 36.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.0e-77 295.0 490 40.4
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.3e-77 294.7 496 38.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.5e-76 291.2 503 36.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.5e-76 290.4 370 45.4
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 9.6e-76 288.5 502 37.8
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.8e-74 284.3 512 36.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.5e-73 281.2 506 37.4
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-73 281.2 373 43.7
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 5.8e-73 279.3 504 35.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 2.9e-72 276.9 529 34.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 4.9e-72 276.2 513 36.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.1e-71 275.0 504 36.3
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.4e-71 274.6 513 36.1
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.4e-71 274.6 513 36.1
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.9e-71 274.2 507 35.5
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 5.5e-71 272.7 469 37.7
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 7.9e-70 268.9 526 35.6
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.0e-69 268.5 515 36.5
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-68 265.0 553 34.9
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.5e-68 264.6 483 35.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.9e-68 264.2 512 34.6
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.9e-68 264.2 429 38.5
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 4.3e-68 263.1 522 33.9
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 5.7e-68 262.7 538 34.2
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.7e-68 262.7 505 34.1
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 7.4e-68 262.3 516 36.8
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.3e-67 261.5 458 36.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.8e-67 260.4 527 35.3
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 8.2e-67 258.8 426 36.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.4e-66 257.3 488 34.6
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.5e-65 254.6 505 33.3
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 2.6e-65 253.8 505 34.7
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.5e-65 253.1 405 38.0
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 1.3e-64 251.5 512 34.2
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.7e-64 251.1 492 33.7
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.7e-64 251.1 517 35.2
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 7.2e-63 245.7 496 33.3
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-62 245.0 530 33.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.6e-62 243.0 491 34.0
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.3e-61 241.5 398 36.9
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.0e-61 240.4 529 33.1
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 5.1e-61 239.6 497 34.2
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.3e-60 236.9 409 36.7
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.4e-60 235.7 426 36.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.6e-59 234.6 267 48.3
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.2e-59 234.2 387 37.0
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 2.2e-59 234.2 412 35.9
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 3.7e-59 233.4 403 37.2
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.7e-59 233.4 400 38.5
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 6.3e-59 232.6 489 33.5
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 6.3e-59 232.6 456 34.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.1e-58 231.9 491 31.8
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.1e-58 231.9 489 32.9
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.8e-58 231.1 453 33.6
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.8e-58 231.1 404 37.1
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 2.4e-58 230.7 494 33.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 9.1e-58 228.8 366 39.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 9.1e-58 228.8 491 32.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.2e-57 228.4 533 31.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-57 228.4 456 34.2
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.0e-57 227.6 398 35.4
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.5e-57 226.5 481 33.1
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 4.5e-57 226.5 504 32.3
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 7.7e-57 225.7 500 31.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 7.7e-57 225.7 402 35.1
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.0e-56 225.3 482 33.4
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.0e-56 225.3 413 34.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.0e-56 225.3 470 32.8
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.7e-56 224.6 494 33.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.9e-56 223.8 437 34.1
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.9e-56 223.8 464 32.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 6.5e-56 222.6 470 35.3
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.5e-56 222.2 499 32.1
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 8.5e-56 222.2 499 32.1
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.1e-55 221.9 497 31.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.5e-55 219.5 479 32.2
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.6e-54 218.0 485 32.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.6e-54 216.9 447 34.7
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 6.1e-54 216.1 392 35.2
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.7e-53 212.6 250 46.4
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-52 211.8 483 32.1
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 3.3e-52 210.3 436 31.4
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.4e-52 209.9 500 28.8
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.7e-51 206.8 486 28.6
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 8.2e-51 205.7 471 30.8
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.2e-51 205.7 505 29.9
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 9.1e-50 202.2 493 32.5
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.2e-49 201.8 263 44.9
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.5e-49 199.9 412 34.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 5.9e-49 199.5 530 29.6
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.9e-49 199.5 495 32.1
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.7e-48 198.0 255 46.7
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 8.5e-48 195.7 402 32.1
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 3.2e-47 193.7 497 31.4
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 4.2e-47 193.4 495 32.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 5.5e-47 193.0 521 29.8
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.2e-46 191.8 491 32.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-46 191.8 438 32.9
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 1.2e-46 191.8 385 34.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-46 191.8 408 33.8
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.6e-46 191.4 489 31.5
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-46 191.4 380 33.9
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.7e-46 189.9 389 32.6
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.6e-41 174.1 272 40.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.8e-37 161.4 388 28.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.4e-34 151.0 524 28.4
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 5.0e-32 143.3 389 30.3
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.7e-30 137.5 483 24.8
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.0e-30 136.0 251 34.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.0e-29 135.6 265 36.2
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.0e-29 135.6 239 35.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.3e-29 134.4 277 30.7
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 4.0e-29 133.7 261 31.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.2e-29 133.3 261 31.8
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 6.8e-29 132.9 297 33.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.6e-28 131.0 281 29.9
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.6e-28 131.0 263 29.7
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.3e-27 126.3 210 37.1
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 1.0e-24 119.0 159 44.0
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.8e-24 117.1 223 35.9
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 3.8e-24 117.1 147 47.6
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.5e-23 114.4 273 28.6
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 9.5e-23 112.5 245 31.0
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-22 112.1 256 29.3
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.8e-21 108.2 340 29.4
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.0e-18 96.3 228 29.8
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 6.6e-16 89.7 144 41.0
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 8.6e-16 89.4 146 40.4
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.2e-14 85.5 190 31.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 2.1e-14 84.7 254 26.8
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 6.1e-14 83.2 135 40.0
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.4e-13 82.0 85 41.2
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.3e-13 81.3 262 29.8
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 1.2e-12 79.0 190 31.1
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 6.6e-08 63.2 139 30.2
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 4.7e-06 57.0 136 30.1


User provided reference genes

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